X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=resources%2Flang%2FMessages.properties;h=6360dc7dc381d9af0194838147a9c787b135ac15;hb=1edf1e06e6f790640ebaa313563009888efb5160;hp=5ce5f461eb036ead0cd271883b2377dd985a5f8b;hpb=3429e8b2a3fceff4350d5554853403e903b4fc68;p=jalview.git diff --git a/resources/lang/Messages.properties b/resources/lang/Messages.properties index 5ce5f46..6360dc7 100644 --- a/resources/lang/Messages.properties +++ b/resources/lang/Messages.properties @@ -38,7 +38,6 @@ action.cancel = Cancel action.create = Create action.update = Update action.delete = Delete -action.snapshot = Snapshot action.clear = Clear action.accept = Accept action.select_ddbb = --- Select Database --- @@ -121,38 +120,39 @@ action.save_as_default = Save as default action.save_as = Save as... action.save = Save action.cancel_fetch = Cancel Fetch -action.save_omit_hidden_columns = Save / Omit Hidden Regions action.change_font = Change Font action.change_font_tree_panel = Change Font (Tree Panel) action.colour = Colour action.calculate = Calculate action.select_all = Select all +action.select_highlighted_columns = Select Highlighted Columns +tooltip.select_highlighted_columns = Press B to mark highlighted columns, Ctrl-(or Cmd)-B to toggle, and Alt-B to mark all but highlighted columns action.deselect_all = Deselect all action.invert_selection = Invert selection action.using_jmol = Using Jmol action.link = Link action.group_link = Group Link action.show_chain = Show Chain -label.highlight_selection = Highlight Selection action.show_group = Show Group action.fetch_db_references = Fetch DB References action.view_flanking_regions = Show flanking regions label.view_flanking_regions = Show sequence data either side of the subsequences involved in this alignment -label.str = Str: -label.seq = Seq: label.structures_manager = Structures Manager label.nickname = Nickname: label.url = URL: label.input_file_url = Enter URL or Input File -label.select_feature = Select feature: +label.select_feature = Select feature label.name = Name +label.name\: = Name: label.name_param = Name: {0} label.group = Group +label.group\: = Group: label.group_name = Group Name label.group_description = Group Description label.edit_group_name_description = Edit Group Name/Description label.colour = Colour: -label.description = Description: +label.description = Description +label.description\: = Description: label.start = Start: label.end = End: label.current_parameter_set_name = Current parameter set name: @@ -218,11 +218,13 @@ label.above_identity_threshold = Above Identity Threshold label.show_sequence_features = Show Sequence Features label.nucleotide = Nucleotide label.protein = Protein +label.nucleotides = Nucleotides +label.proteins = Proteins label.to_new_alignment = To New Alignment label.to_this_alignment = Add To This Alignment label.apply_colour_to_all_groups = Apply Colour To All Groups -label.modify_identity_thereshold = Modify Identity Threshold... -label.modify_conservation_thereshold = Modify Conservation Threshold... +label.modify_identity_threshold = Modify Identity Threshold... +label.modify_conservation_threshold = Modify Conservation Threshold... label.input_from_textbox = Input from textbox label.centre_column_labels = Centre column labels label.automatic_scrolling = Automatic Scrolling @@ -239,7 +241,6 @@ label.except_selected_sequences = All except selected sequences label.all_but_selected_region = All but Selected Region (Shift+Ctrl+H) label.selected_region = Selected Region label.all_sequences_columns = All Sequences and Columns -label.hide_insertions = Hide columns gapped for selection label.hide_selected_annotations = Hide selected annotations label.show_selected_annotations = Show selected annotations label.group_consensus = Group Consensus @@ -320,7 +321,6 @@ label.found_match_for = Found match for {0} label.font = Font: label.size = Size: label.style = Style: -label.enter_redundancy_threshold = Enter the redundancy threshold label.calculating = Calculating.... label.modify_conservation_visibility = Modify conservation visibility label.colour_residues_above_occurence = Colour residues above % occurence @@ -364,7 +364,6 @@ label.example = Example label.example_param = Example: {0} label.select_file_format_before_saving = You must select a file format before saving! label.file_format_not_specified = File format not specified -label.alignment_contains_hidden_columns = The Alignment contains hidden regions (hidden sequences/columns).\nDo you want to save only the visible alignment? label.couldnt_save_file = Couldn't save file: {0} label.error_saving_file = Error Saving File label.remove_from_default_list = Remove from default list? @@ -385,14 +384,14 @@ label.select_at_least_three_bases_in_at_least_one_sequence_to_cDNA_translation = label.translation_failed = Translation Failed label.error_when_translating_sequences_submit_bug_report = Unfortunately, something went wrong when translating your sequences.\nPlease take a look in the Jalview java console\nand submit a bug report including the stacktrace. label.implementation_error = Implementation error: -label.automatically_associate_pdb_files_with_sequences_same_name = Do you want to automatically associate the {0} PDB files with sequences in the alignment that have the same name? -label.automatically_associate_pdb_files_by_name = Automatically Associate PDB files by name +label.automatically_associate_structure_files_with_sequences_same_name = Do you want to automatically associate the {0} structure file(s) with sequences in the alignment that have the same name? +label.automatically_associate_structure_files_by_name = Automatically Associate Structure files by name label.ignore_unmatched_dropped_files_info = Do you want to ignore the {0} files whose names did not match any sequence IDs ? label.ignore_unmatched_dropped_files = Ignore unmatched dropped files? label.view_name_original = Original label.enter_view_name = Enter View Name label.enter_label = Enter label -label.enter_label_for_the_structure = Enter a label for the structure? +label.enter_label_for_the_structure = Enter a label for the structure label.pdb_entry_is_already_displayed = {0} is already displayed.\nDo you want to re-use this viewer ? label.map_sequences_to_visible_window = Map Sequences to Visible Window: {0} label.add_pdbentry_to_view = Do you want to add {0} to the view called\n{1}\n @@ -466,7 +465,6 @@ label.no_features_added_to_this_alignment = No Features added to this alignment! label.features_can_be_added_from_searches_1 = (Features can be added from searches or label.features_can_be_added_from_searches_2 = from Jalview / GFF features files) label.calculating_pca= Calculating PCA -label.reveal_columns = Reveal Columns label.jalview_cannot_open_file = Jalview can't open file label.jalview_applet = Jalview applet label.loading_data = Loading data @@ -474,7 +472,6 @@ label.memory_stats = Total Free Memory: {0} MB; Max Memory: {1} MB; {2} % label.calculating_tree = Calculating tree label.state_queueing = queuing label.state_running = running -label.state_complete = complete label.state_completed = finished label.state_job_cancelled = job cancelled!! label.state_job_error = job error! @@ -500,7 +497,6 @@ label.jmol_help = Jmol Help label.chimera_help = Chimera Help label.close_viewer = Close Viewer label.confirm_close_chimera = This will close Jalview''s connection to {0}.
Do you want to close the Chimera window as well? -label.chimera_help = Chimera Help label.all = All label.sort_by = Sort alignment by label.sort_by_score = Sort by Score @@ -520,15 +516,14 @@ label.reset_min_max_colours_to_defaults = Reset min and max colours to defaults label.align_structures_using_linked_alignment_views = Align structures using {0} linked alignment views label.connect_to_session = Connect to session {0} label.threshold_feature_display_by_score = Threshold the feature display by score. -label.threshold_feature_no_thereshold = No Threshold -label.threshold_feature_above_thereshold = Above Threshold -label.threshold_feature_below_thereshold = Below Threshold -label.adjust_thereshold = Adjust threshold +label.threshold_feature_no_threshold = No Threshold +label.threshold_feature_above_threshold = Above Threshold +label.threshold_feature_below_threshold = Below Threshold +label.adjust_threshold = Adjust threshold label.toggle_absolute_relative_display_threshold = Toggle between absolute and relative display threshold. label.display_features_same_type_different_label_using_different_colour = Display features of the same type with a different label using a different colour. (e.g. domain features) label.select_colour_minimum_value = Select Colour for Minimum Value label.select_colour_maximum_value = Select Colour for Maximum Value -label.open_new_jmol_view_with_all_structures_associated_current_selection_superimpose_using_alignment = Open a new structure viewer with all structures associated with the current selection and superimpose them using the alignment. label.open_url_param = Open URL {0} label.open_url_seqs_param = Open URL ({0}..) ({1} seqs) label.load_pdb_file_associate_with_sequence = Load a PDB file and associate it with sequence {0} @@ -583,8 +578,8 @@ label.histogram = Histogram label.logo = Logo label.non_positional_features = List Non-positional Features label.database_references = List Database References -label.share_selection_across_views = Share selection across views -label.scroll_highlighted_regions = Scroll to highlighted regions +#label.share_selection_across_views = Share selection across views +#label.scroll_highlighted_regions = Scroll to highlighted regions label.gap_symbol = Gap Symbol label.prot_alignment_colour = Protein Alignment Colour label.nuc_alignment_colour = Nucleotide Alignment Colour @@ -667,20 +662,12 @@ label.cut_paste = Cut'n'Paste label.adjusting_parameters_for_calculation = Adjusting parameters for existing Calculation label.2d_rna_structure_line = 2D RNA {0} (alignment) label.2d_rna_sequence_name = 2D RNA - {0} -label.edit_name_and_description_current_group = Edit name and description of current group. -label.view_structure_for = View structure for {0} -label.view_all_structures = View all {0} structures. -label.view_all_representative_structures = View all {0} representative structures. -label.open_new_jmol_view_with_all_representative_structures_associated_current_selection_superimpose_using_alignment = Opens a new structure viewer with all representative structures\nassociated with the current selection\nsuperimposed with the current alignment. -label.associate_structure_with_sequence = Associate Structure with Sequence +label.edit_name_and_description_current_group = Edit name and description of current group label.from_file = From File -label.enter_pdb_id = Enter PDB Id -label.discover_pdb_ids = Discover PDB IDs +label.enter_pdb_id = Enter PDB Id (or pdbid:chaincode) label.text_colour = Text Colour action.set_text_colour = Text Colour... label.structure = Structure -label.view_structure = View Structure -label.view_protein_structure = View Protein Structure label.show_pdbstruct_dialog = 3D Structure Data... label.view_rna_structure = VARNA 2D Structure label.clustalx_colours = Clustalx colours @@ -708,7 +695,6 @@ label.translate_cDNA = Translate as cDNA label.reverse = Reverse label.reverse_complement = Reverse Complement label.linked_view_title = Linked CDS and protein view -label.align = Align label.extract_scores = Extract Scores label.get_cross_refs = Get Cross-References label.sort_alignment_new_tree = Sort Alignment With New Tree @@ -720,7 +706,6 @@ label.use_registry = Use Registry label.add_local_source = Add Local Source label.set_as_default = Set as Default label.show_labels = Show labels -label.background_colour = Background Colour action.background_colour = Background Colour... label.associate_nodes_with = Associate Nodes With label.jalview_pca_calculation = Jalview PCA Calculation @@ -746,8 +731,8 @@ label.move_url_down = Move URL Down label.add_sbrs_definition = Add a SBRS Definition label.edit_sbrs_definition = Edit SBRS Definition label.delete_sbrs_definition = Delete SBRS Definition -label.your_sequences_have_been_verified = Your sequences have been verified against known sequence databases. Some of the ids have been\n altered, most likely the start/end residue will have been updated.\n Save your alignment to maintain the updated id.\n\n -label.sequence_names_updated = Sequence names updated +label.your_sequences_have_been_verified = Your sequences have been verified against known sequence databases.\n(Use Calculate | Show flanking regions to show enclosing sequence.)\nTo preserve data changes, save your alignment.\n\n +label.sequences_updated = Sequences updated label.dbref_search_completed = DBRef search completed label.show_all_chains = Show all chains label.fetch_all_param = Fetch all {0} @@ -789,7 +774,7 @@ label.select_backgroud_colour = Select Background Colour label.invalid_font = Invalid Font label.separate_multiple_accession_ids = Enter one or more accession IDs separated by a semi-colon ";" label.separate_multiple_query_values = Enter one or more {0}s separated by a semi-colon ";" -label.search_all = Enter one or more search values separated by a semi-colon ";" (Note: This Searches the entire PDB database) +label.search_all = Enter one or more search values separated by a semi-colon ";" (Note: This searches the entire database) label.replace_commas_semicolons = Replace commas with semi-colons label.parsing_failed_syntax_errors_shown_below_param = Parsing failed. Syntax errors shown below {0} label.parsing_failed_unrecoverable_exception_thrown_param = \nParsing failed. An unrecoverable exception was thrown\:\n {0} @@ -800,10 +785,14 @@ label.wswublast_client_credits = To display sequence features an exact Uniprot i label.blasting_for_unidentified_sequence = BLASTing for unidentified sequences label.select_columns_containing = Select columns containing label.select_columns_not_containing = Select columns that do not contain +label.hide_columns_containing = Hide columns containing +label.hide_columns_not_containing = Hide columns that do not contain option.trim_retrieved_seqs = Trim retrieved sequences label.trim_retrieved_sequences = When the reference sequence is longer than the sequence that you are working with, only keep the relevant subsequences. -label.use_sequence_id_1 = Use $SEQUENCE_ID$ or $SEQUENCE_ID=//=$ -label.use_sequence_id_2 = \nto embed sequence id in URL +label.use_sequence_id_1 = Use $DB_ACCESSION$ or $DB_ACCESSION=//=$ +label.use_sequence_id_2 = to embed accession id in URL +label.use_sequence_id_3 = Use $SEQUENCE_ID$ similarly to embed sequence id +label.use_sequence_id_4 = label.ws_parameters_for = Parameters for {0} label.switch_server = Switch server label.choose_jabaws_server = Choose a server for running this service @@ -811,7 +800,6 @@ label.services_at = Services at {0} label.rest_client_submit = {0} using {1} label.fetch_retrieve_from =Retrieve from {0} label.fetch_retrieve_from_all_sources = Retrieve from all {0} sources in {1}
First is :{2} -#label.feature_settings_click_drag = Click/drag feature types up or down to change render order.
Double click to select columns containing feature in alignment/current selection
Pressing Alt will select columns outside features rather than inside
Pressing Shift to modify current selection (rather than clear current selection)
Press CTRL or Command/Meta to toggle columns in/outside features
label.feature_settings_click_drag = Drag up or down to change render order.
Double click to select columns containing feature. label.transparency_tip = Adjust transparency to 'see through' feature colours. label.opt_and_params_further_details = see further details by right-clicking @@ -827,17 +815,10 @@ label.user_preset = User Preset label.service_preset = Service Preset label.run_with_preset = Run {0} with preset label.view_service_doc_url = View {1} -label.submit_sequence = Submit {0} {1} {2} {3} to
{4} action.by_title_param = By {0} -label.alignment = Alignment -label.secondary_structure_prediction = Secondary Structure Prediction -label.sequence_database_search = Sequence Database Search -label.analysis = Analysis -label.protein_disorder = Protein Disorder label.source_from_db_source = Sources from {0} label.from_msname = from {0} label.superpose_with = Superpose with -action.do = Do label.scale_label_to_column = Scale Label to Column label.add_new_row = Add New Row label.edit_label_description = Edit Label/Description @@ -881,7 +862,7 @@ label.service_url = Service URL label.copied_sequences = Copied sequences label.cut_sequences = Cut Sequences label.conservation_colour_increment = Conservation Colour Increment ({0}) -label.percentage_identity_thereshold = Percentage Identity Threshold ({0}) +label.percentage_identity_threshold = Percentage Identity Threshold ({0}) label.error_unsupported_owwner_user_colour_scheme = Unsupported owner for User Colour scheme dialog label.save_alignment_to_file = Save Alignment to file label.save_features_to_file = Save Features to File @@ -897,7 +878,6 @@ label.save_vamsas_document_archive = Save Vamsas Document Archive label.saving_vamsas_doc = Saving VAMSAS Document to {0} label.load_feature_colours = Load Feature Colours label.save_feature_colours = Save Feature Colour Scheme -label.dataset_for = {0} Dataset for {1} label.select_startup_file = Select startup file label.select_default_browser = Select default web browser label.save_tree_as_newick = Save tree as newick file @@ -925,15 +905,9 @@ error.null_from_clone1 = Null from clone1! error.implementation_error_sortbyfeature = Implementation Error - sortByFeature method must be one of FEATURE_SCORE, FEATURE_LABEL or FEATURE_DENSITY. error.not_yet_implemented = Not yet implemented error.unknown_type_dna_or_pep = Unknown Type {0} - dna or pep are the only allowed values. -error.implementation_error_dont_know_thereshold_annotationcolourgradient = Implementation error: don't know about threshold setting for current AnnotationColourGradient. -error.implementation_error_embeddedpopup_not_null = Implementation error - embeddedPopup must be non-null -error.invalid_colour_for_mycheckbox = Invalid color for MyCheckBox -error.implementation_error_unrecognised_render_object_for_features_type = Implementation Error: Unrecognised render object {0} for features of type {1} -error.implementation_error_unsupported_feature_colour_object = Implementation error: Unsupported feature colour object. +error.implementation_error_dont_know_threshold_annotationcolourgradient = Implementation error: don't know about threshold setting for current AnnotationColourGradient. error.invalid_separator_parameter = Invalid separator parameter - must be non-zero length error.alignment_cigararray_not_implemented = Alignment(CigarArray) not yet implemented -error.weak_sequencei_equivalence_not_yet_implemented = Weak sequenceI equivalence not yet implemented. -error.implementation_error_can_only_make_alignmnet_from_cigararray = Implementation Error - can only make an alignment view from a CigarArray of sequences. error.empty_view_cannot_be_updated = empty view cannot be updated. error.mismatch_between_number_of_sequences_in_block = Mismatch between number of sequences in block {0} ({1}) and the original view ({2}) error.padding_not_yet_implemented = Padding not yet implemented @@ -955,21 +929,18 @@ error.not_yet_implemented_cigar_object_from_cigar_string = NOT YET Implemented: error.implementation_bug_cigar_operation = Implementation Bug. Cigar Operation {0} {1} not one of {2}, {3}, or {4}. error.implementation_error_for_new_cigar = Implementation error for new Cigar(SequenceI) error.implementation_error_cigar_seq_no_operations = Implementation error: {0}th sequence Cigar has no operations. -error.implementation_error_jmol_getting_data = Implementation error - Jmol seems to be still working on getting its data - report at http://issues.jalview.org/browse/JAL-1016 error.implementation_error_no_pdbentry_from_index = Implementation error - no corresponding pdbentry (for index {0}) to add sequences mappings to error.jmol_version_not_compatible_with_jalview_version = Jmol version {0} is not compatible with this version of Jalview. Report this problem at issues.jalview.org error.not_implemented_remove = Remove: Not implemented error.not_implemented_clone = Clone: Not implemented -error.implementation_error_chimera_getting_data = Implementation error - Chimera seems to be still working on getting its data - report at http://issues.jalview.org/browse/JAL-1016 error.call_setprogressbar_before_registering_handler = call setProgressBar before registering the progress bar's handler. label.cancelled_params = Cancelled {0} error.implementation_error_cannot_show_view_alignment_frame = Implementation error: cannot show a view from another alignment in an AlignFrame. -error.implementation_error_dont_know_about_thereshold_setting = Implementation error: don't know about threshold setting for current AnnotationColourGradient. +error.implementation_error_dont_know_about_threshold_setting = Implementation error: don't know about threshold setting for current AnnotationColourGradient. error.eps_generation_not_implemented = EPS Generation not yet implemented error.png_generation_not_implemented = PNG Generation not yet implemented error.try_join_vamsas_session_another = Trying to join a vamsas session when another is already connected error.invalid_vamsas_session_id = Invalid vamsas session id -error.implementation_error_cannot_create_groovyshell = Implementation Error. Cannot create groovyShell without Groovy on the classpath! label.groovy_support_failed = Jalview Groovy Support Failed label.couldnt_create_groovy_shell = Couldn't create the groovy Shell. Check the error log for the details of what went wrong. error.unsupported_version_calcIdparam = Unsupported Version for calcIdparam {0} @@ -984,7 +955,6 @@ error.setstatus_called_non_existent_job_pane = setStatus called for non-existent error.implementation_error_cannot_find_marshaller_for_param_set =Implementation error: Can't find a marshaller for the parameter set error.implementation_error_old_jalview_object_not_bound =IMPLEMENTATION ERROR: old jalview object is not bound ! ({0}) error.implementation_error_vamsas_doc_class_should_bind_to_type = Implementation Error: Vamsas Document Class {0} should bind to a {1} (found a {2}) -error.implementation_error_jalview_class_should_bind_to_type = Implementation Error: Jalview Class {0} should bind to a {1} (found a {2}) error.invalid_vamsas_rangetype_cannot_resolve_lists = Invalid vamsas RangeType - cannot resolve both lists of Pos and Seg from choice! error.implementation_error_maplist_is_null = Implementation error. MapList is null for initMapType. error.implementation_error_cannot_have_null_alignment = Implementation error: Cannot have null alignment property key @@ -1026,10 +996,11 @@ error.implementation_error_need_to_have_httpresponse = Implementation Error: nee error.dbrefsource_implementation_exception =DBRefSource Implementation Exception error.implementation_error_dbinstance_must_implement_interface = Implmentation Error - getDbInstances must be given a class that implements jalview.ws.seqfetcher.DbSourceProxy (was given{0}) error.implementation_error_must_init_dbsources =Implementation error. Must initialise dbSources -label.view_controller_toggled_marked = {0} {1} columns {2} containing features of type {3} across {4} sequence(s) +label.view_controller_toggled_marked = {0} {1} columns {2} features of type {3} across {4} sequence(s) label.toggled = Toggled label.marked = Marked -label.not = not +label.containing = containing +label.not_containing = not containing label.no_feature_of_type_found = No features of type {0} found. label.submission_params = Submission {0} label.empty_alignment_job = Empty Alignment Job @@ -1039,7 +1010,7 @@ label.pca_recalculating = Recalculating PCA label.pca_calculating = Calculating PCA label.select_foreground_colour = Choose foreground colour label.select_colour_for_text = Select Colour for Text -label.adjunst_foreground_text_colour_thereshold = Adjust Foreground Text Colour Threshold +label.adjunst_foreground_text_colour_threshold = Adjust Foreground Text Colour Threshold label.select_subtree_colour = Select Sub-Tree Colour label.create_new_sequence_features = Create New Sequence Feature(s) label.amend_delete_features = Amend/Delete Features for {0} @@ -1059,7 +1030,6 @@ exception.mismatched_unseen_closing_char = Mismatched (unseen) closing character exception.mismatched_closing_char = Mismatched closing character {0} exception.mismatched_opening_char = Mismatched opening character {0} at {1} exception.invalid_datasource_couldnt_obtain_reader = Invalid datasource. Could not obtain Reader -exception.index_value_not_in_range = {0}: Index value {1} not in range [0..{2}] exception.unterminated_cigar_string = Unterminated cigar string exception.unexpected_operation_cigar_string_pos = Unexpected operation {0} in cigar string (position {1} in {2} exception.couldnt_parse_responde_from_annotated3d_server = Couldn't parse response from Annotate3d server @@ -1087,7 +1057,6 @@ exception.ranml_problem_parsing_data = Problem parsing data as RNAML ({0}) exception.pfam_no_sequences_found = No sequences found (PFAM input) exception.stockholm_invalid_format = This file is not in valid STOCKHOLM format: First line does not contain '# STOCKHOLM' exception.couldnt_parse_sequence_line = Could not parse sequence line: {0} -exception.error_parsing_line = Error parsing {0} exception.unknown_annotation_detected = Unknown annotation detected: {0} {1} exception.couldnt_store_sequence_mappings = Couldn't store sequence mappings for {0} exception.matrix_too_many_iteration = Too many iterations in {0} (max is {1}) @@ -1095,7 +1064,6 @@ exception.browser_not_found = Exception in finding browser: {0} exception.browser_unable_to_locate = Unable to locate browser: {0} exception.invocation_target_exception_creating_aedesc = InvocationTargetException while creating AEDesc: {0} exception.illegal_access_building_apple_evt= IllegalAccessException while building AppleEvent: {0} -exception.instantiation_creating_aedesc = InstantiationException while creating AEDesc: {0} exception.unable_to_launch_url = Unable to launch URL: {0} exception.unable_to_create_internet_config = Unable to create an Internet Config instance: {0} exception.invocation_target_calling_url = InvocationTargetException while calling openURL: {0} @@ -1104,8 +1072,6 @@ exception.interrupted_launching_browser = InterruptedException while launching b exception.das_source_doesnt_support_sequence_command = Source {0} does not support the sequence command. exception.invalid_das_source = Invalid das source: {0} exception.ebiembl_retrieval_failed_on = EBI EMBL XML retrieval failed on {0}:{1} -label.no_embl_record_found = # No EMBL record retrieved for {0}:{1} -label.embl_successfully_parsed = # Successfully parsed the {0} queries into an Alignment exception.no_pdb_records_for_chain = No PDB Records for {0} chain {1} exception.unexpected_handling_rnaml_translation_for_pdb = Unexpected exception when handling RNAML translation of PDB data exception.couldnt_recover_sequence_properties_for_alignment = Couldn't recover sequence properties for alignment @@ -1166,7 +1132,7 @@ status.das_feature_fetching_complete = DAS Feature Fetching Complete status.fetching_db_refs = Fetching db refs status.loading_cached_pdb_entries = Loading Cached PDB Entries status.searching_for_pdb_structures = Searching for PDB Structures -status.opening_file = opening file +status.opening_file_for = opening file for status.colouring_chimera = Colouring Chimera label.font_doesnt_have_letters_defined = Font doesn't have letters defined\nso cannot be used\nwith alignment data label.font_too_small = Font size is too small @@ -1180,7 +1146,7 @@ warn.user_defined_width_requirements = The user defined width for the\nannotatio label.couldnt_create_sequence_fetcher = Couldn't create SequenceFetcher warn.couldnt_create_sequence_fetcher_client = Could not create the sequence fetcher client. Check error logs for details. warn.server_didnt_pass_validation = Service did not pass validation.\nCheck the Jalview Console for more details. -warn.url_must_contain = Sequence URL must contain $SEQUENCE_ID$ or a regex $SEQUENCE_ID=//=$ +warn.url_must_contain = Sequence URL must contain $SEQUENCE_ID$, $DB_ACCESSION$, or a regex warn.urls_not_contacted = URLs that could not be contacted warn.urls_no_jaba = URLs without any JABA Services info.validate_jabaws_server = Validate JabaWS Server ?\n(Look in console output for results) @@ -1196,8 +1162,8 @@ label.edit_jabaws_url = Edit JABAWS URL label.add_jabaws_url = Add new JABAWS URL label.news_from_jalview = News from http://www.jalview.org label.cut_paste_alignmen_file = Cut & Paste Alignment File -label.enter_redundancy_thereshold = Enter the redundancy threshold -label.select_dark_light_set_thereshold = Select a dark and light text colour, then set the threshold to
switch between colours, based on background colour +label.enter_redundancy_threshold = Enter the redundancy threshold +label.select_dark_light_set_threshold = Select a dark and light text colour, then set the threshold to
switch between colours, based on background colour label.select_feature_colour = Select Feature Colour label.delete_all = Delete all sequences warn.delete_all = Deleting all sequences will close the alignment window.
Confirm deletion or Cancel. @@ -1218,29 +1184,24 @@ label.no_colour_selection_in_scheme = Please make a colour selection before appl label.no_colour_selection_warn = Error saving colour scheme label.open_split_window? = Would you like to open as a split window, with cDNA and protein linked? label.open_split_window = Open split window -label.no_mappings = No mappings found action.no = No action.yes = Yes label.for = for label.select_by_annotation = Select/Hide Columns by Annotation action.select_by_annotation = Select/Hide Columns by Annotation... label.threshold_filter = Threshold Filter -action.hide = Hide -action.select = Select label.alpha_helix = Alpha Helix label.beta_strand = Beta Strand label.turn = Turn label.select_all = Select All label.structures_filter = Structures Filter label.search_filter = Search Filter -label.description = Description label.include_description= Include Description action.back = Back label.hide_insertions = Hide Insertions label.mark_as_representative = Mark as representative label.open_jabaws_web_page = Open JABAWS web page -label.opens_the_jabaws_server_homepage = Opens the JABAWS server's homepage in web browser -label.pdb_sequence_getcher = PDB Sequence Fetcher +label.pdb_sequence_fetcher = PDB Sequence Fetcher label.result = result label.results = results label.structure_chooser = Structure Chooser @@ -1251,7 +1212,7 @@ info.select_filter_option = Select Filter Option/Manual Entry info.associate_wit_sequence = Associate with Sequence label.search_result = Search Result label.found_structures_summary = Found Structures Summary -label.configure_displayed_columns = Configure Displayed Columns +label.configure_displayed_columns = Customise Displayed Options label.start_jalview = Start Jalview label.biojs_html_export = BioJS label.scale_as_cdna = Scale protein residues to codons @@ -1278,14 +1239,39 @@ label.structure_chooser_filter_time = Structure Chooser - Filter time ({0}) label.structure_chooser_no_of_structures = Structure Chooser - {0} Found ({1}) info.no_pdb_entry_found_for = No PDB entry found for {0} exception.unable_to_detect_internet_connection = Jalview is unable to detect an internet connection -exception.pdb_rest_service_no_longer_available = PDB rest services no longer available! +exception.fts_rest_service_no_longer_available = {0} rest services no longer available! exception.resource_not_be_found = The requested resource could not be found -exception.pdb_server_error = There seems to be an error from the PDB server -exception.pdb_server_unreachable = Jalview is unable to reach the PDBe Solr server. \nPlease ensure that you are connected to the internet and try again. +exception.fts_server_error = There seems to be an error from the {0} server +exception.fts_server_unreachable = Jalview is unable to reach the {0} server. \nPlease ensure that you are connected to the internet and try again. label.nw_mapping = Needleman & Wunsch Alignment label.sifts_mapping = SIFTs Mapping label.mapping_method = Sequence \u27f7 Structure mapping method -label.mapping_method = Sequence \u27f7 Structure mapping method -status.waiting_for_user_to_select_output_file = Waiting for user to select {0} file. -status.cancelled_image_export_operation = Cancelled {0} export operation. -info.error_creating_file = Error creating {0} file. +status.waiting_for_user_to_select_output_file = Waiting for user to select {0} file +status.cancelled_image_export_operation = Cancelled {0} export operation +info.error_creating_file = Error creating {0} file +exception.outofmemory_loading_mmcif_file = Out of memory loading mmCIF File +label.run_groovy = Run Groovy console script +label.run_groovy_tip = Run the script in the Groovy console over this alignment +label.couldnt_run_groovy_script = Failed to run Groovy script +label.uniprot_sequence_fetcher = UniProt Sequence Fetcher +action.next_page= >> +action.prev_page= << +label.next_page_tooltip=Next Page +label.prev_page_tooltip=Previous Page +exception.bad_request=Bad request. There is a problem with your input. +exception.service_not_available=Service not available. The server is being updated, try again later. +status.launching_3d_structure_viewer = Launching 3D Structure viewer... +status.fetching_3d_structures_for_selected_entries = Fetching 3D Structures for selected entries... +status.fetching_dbrefs_for_sequences_without_valid_refs = Fetching db refs for {0} sequence(s) without valid db ref required for SIFTS mapping +status.fetching_3d_structures_for = Fetching 3D Structure for {0} +status.obtaining_mapping_with_sifts = Obtaining mapping with SIFTS +status.obtaining_mapping_with_nw_alignment = Obtaining mapping with NW alignment +status.exporting_alignment_as_x_file = Exporting alignment as {0} file +label.column = Column +label.cant_map_cds = Unable to map CDS to protein\nCDS missing or incomplete +label.operation_failed = Operation failed +label.SEQUENCE_ID_no_longer_used = $SEQUENCE_ID$ is no longer used for DB accessions +label.SEQUENCE_ID_for_DB_ACCESSION1 = Please review your URL links in the 'Connections' tab of the Preferences window: +label.SEQUENCE_ID_for_DB_ACCESSION2 = URL links using '$SEQUENCE_ID$' for DB accessions now use '$DB_ACCESSION$'. +label.do_not_display_again = Do not display this message again +label.output_seq_details = Output Sequence Details to list all database references