X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=resources%2Flang%2FMessages.properties;h=c248a10c8ab95a55b9e3b65ef5090c1174e03b48;hb=3f62f10ab0f8985945e460c70c89b530446d6afa;hp=ab18a2ed1225cb773e58597b4651645f57d621f1;hpb=042eef584b03e4bfa12cb048d19c269f13588aa6;p=jalview.git

diff --git a/resources/lang/Messages.properties b/resources/lang/Messages.properties
index ab18a2e..c248a10 100644
--- a/resources/lang/Messages.properties
+++ b/resources/lang/Messages.properties
@@ -242,7 +242,6 @@ label.documentation = Documentation
 label.about = About...
 label.show_sequence_limits = Show Sequence Limits
 action.feature_settings = Feature Settings...
-label.feature_settings = Feature Settings
 label.all_columns = All Columns
 label.all_sequences = All Sequences
 label.selected_columns = Selected Columns 
@@ -267,6 +266,7 @@ label.use_rnaview = Use RNAView for secondary structure
 label.autoadd_secstr = Add secondary structure annotation to alignment
 label.autoadd_temp = Add Temperature Factor annotation to alignment
 label.structure_viewer = Default structure viewer
+label.double_click_to_browse = Double-click to browse for file
 label.chimera_path = Path to Chimera program
 label.chimera_path_tip = Jalview will first try any path entered here, else standard installation locations.<br>Double-click to browse for file.
 label.invalid_chimera_path = Chimera path not found or not executable
@@ -274,6 +274,7 @@ label.chimera_missing = Chimera structure viewer not found.<br/>Please enter the
 label.chimera_failed = Error opening Chimera - is it installed?\nCheck path in Preferences, Structure
 label.min_colour = Minimum Colour
 label.max_colour = Maximum Colour
+label.no_colour = No Colour
 label.use_original_colours = Use Original Colours
 label.threshold_minmax = Threshold is min/max
 label.represent_group_with = Represent Group with {0}
@@ -281,9 +282,9 @@ label.selection = Selection
 label.group_colour = Group Colour
 label.sequence = Sequence
 label.view_pdb_structure = View PDB Structure
-label.min = Min:
-label.max = Max:
-label.colour_by_label = Colour by label
+label.min_value = Min value
+label.max_value = Max value
+label.no_value = No value
 label.new_feature = New Feature
 label.match_case = Match Case
 label.view_alignment_editor = View in alignment editor
@@ -368,6 +369,8 @@ label.optimise_order = Optimise Order
 label.seq_sort_by_score = Sequence sort by Score
 label.load_colours = Load Colours
 label.save_colours = Save Colours
+label.load_colours_tooltip = Load feature colours and filters from file
+label.save_colours_tooltip = Save feature colours and filters to file
 label.fetch_das_features = Fetch DAS Features
 label.selected_database_to_fetch_from = Selected {0} database {1} to fetch from {2} 
 label.database_param = Database: {0}
@@ -400,10 +403,6 @@ label.view_name_original = Original
 label.enter_view_name = Enter View Name
 label.enter_label = Enter label
 label.enter_label_for_the_structure = Enter a label for the structure
-label.pdb_entry_is_already_displayed = {0} is already displayed.\nDo you want to re-use this viewer ?
-label.map_sequences_to_visible_window = Map Sequences to Visible Window: {0}
-label.add_pdbentry_to_view = Do you want to add {0} to the view called\n{1}\n
-label.align_to_existing_structure_view = Align to existing structure view
 label.pdb_entries_couldnt_be_retrieved = The following pdb entries could not be retrieved from the PDB\:\n{0}\nPlease retry, or try downloading them manually.
 label.couldnt_load_file = Couldn't load file
 label.couldnt_find_pdb_id_in_file = Couldn't find a PDB id in the file supplied. Please enter an Id to identify this structure.
@@ -417,7 +416,7 @@ label.input_alignment_from_url = Input Alignment From URL
 label.input_alignment = Input Alignment
 label.couldnt_import_as_vamsas_session = Couldn't import {0} as a new vamsas session.
 label.vamsas_document_import_failed = Vamsas Document Import Failed
-label.couldnt_locate = Couldn't locate {0}
+label.couldnt_locate = Could not locate {0}
 label.url_not_found = URL not found
 label.new_sequence_url_link = New sequence URL link
 label.cannot_edit_annotations_in_wrapped_view = Cannot edit annotations in wrapped view
@@ -490,6 +489,10 @@ label.settings_for_type = Settings for {0}
 label.view_full_application = View in Full Application
 label.load_associated_tree = Load Associated Tree...
 label.load_features_annotations = Load Features/Annotations...
+label.load_vcf = Load SNP variants from plain text or indexed VCF data
+label.load_vcf_file = Load VCF File
+label.searching_vcf = Loading VCF variants...
+label.added_vcf = Added {0} VCF variants to {1} sequence(s)
 label.export_features = Export Features...
 label.export_annotations = Export Annotations...
 label.to_upper_case = To Upper Case
@@ -528,7 +531,6 @@ label.threshold_feature_above_threshold = Above Threshold
 label.threshold_feature_below_threshold = Below Threshold
 label.adjust_threshold = Adjust threshold
 label.toggle_absolute_relative_display_threshold = Toggle between absolute and relative display threshold.
-label.display_features_same_type_different_label_using_different_colour = Display features of the same type with a different label using a different colour. (e.g. domain features)
 label.select_colour_minimum_value = Select Colour for Minimum Value
 label.select_colour_maximum_value = Select Colour for Maximum Value
 label.open_url_param = Open URL {0}
@@ -673,7 +675,8 @@ label.2d_rna_structure_line = 2D RNA {0} (alignment)
 label.2d_rna_sequence_name = 2D RNA - {0}
 label.edit_name_and_description_current_group = Edit name and description of current group
 label.from_file = From File
-label.enter_pdb_id = Enter PDB Id (or pdbid:chaincode)
+label.enter_pdb_id = Enter PDB Id
+label.enter_pdb_id_tip = Enter PDB Id (or pdbid:chaincode)
 label.text_colour = Text Colour...
 label.structure = Structure
 label.show_pdbstruct_dialog = 3D Structure Data...
@@ -745,7 +748,6 @@ label.delete_sbrs_definition = Delete SBRS Definition
 label.your_sequences_have_been_verified = Your sequences have been verified against known sequence databases.\n(Use Calculate | Show flanking regions to show enclosing sequence.)\nTo preserve data changes, save your alignment.\n\n
 label.sequences_updated = Sequences updated
 label.dbref_search_completed = DBRef search completed
-label.show_all_chains = Show all chains
 label.fetch_all_param = Fetch all {0}
 label.paste_new_window = Paste To New Window
 label.settings_for_param = Settings for {0}
@@ -780,7 +782,7 @@ label.pairwise_aligned_sequences = Pairwise Aligned Sequences
 label.original_data_for_params = Original Data for {0}
 label.points_for_params = Points for {0}
 label.transformed_points_for_params = Transformed points for {0}
-label.graduated_color_for_params = Graduated Feature Colour for {0}
+label.variable_color_for = Variable Feature Colour for {0}
 label.select_background_colour = Select Background Colour
 label.invalid_font = Invalid Font
 label.separate_multiple_accession_ids = Enter one or more accession IDs separated by a semi-colon ";"
@@ -867,7 +869,7 @@ label.msa_service_is_unknown = The Multiple Sequence Alignment Service named {0}
 label.service_called_is_not_seq_search_service = The Service called \n{0}\nis not a \nSequence Search Service\!
 label.seq_search_service_is_unknown = The Sequence Search Service named {0} is unknown
 label.feature_type = Feature Type
-label.display = Display
+label.show = Show
 label.service_url = Service URL
 label.copied_sequences = Copied sequences
 label.cut_sequences = Cut Sequences
@@ -914,7 +916,6 @@ label.as_percentage = As Percentage
 error.not_implemented = Not implemented
 error.no_such_method_as_clone1_for = No such method as clone1 for {0}
 error.null_from_clone1 = Null from clone1!
-error.implementation_error_sortbyfeature = Implementation Error - sortByFeature method must be one of FEATURE_SCORE, FEATURE_LABEL or FEATURE_DENSITY.
 error.not_yet_implemented = Not yet implemented
 error.unknown_type_dna_or_pep = Unknown Type {0} - dna or pep are the only allowed values.
 error.implementation_error_dont_know_threshold_annotationcolourgradient = Implementation error: don't know about threshold setting for current AnnotationColourGradient.
@@ -1214,7 +1215,6 @@ label.pdb_sequence_fetcher = PDB Sequence Fetcher
 label.result = result
 label.results = results
 label.structure_chooser = Structure Chooser
-label.select = Select : 
 label.invert = Invert 
 label.select_pdb_file = Select PDB File
 info.select_filter_option = Select Filter Option/Manual Entry
@@ -1283,9 +1283,7 @@ label.SEQUENCE_ID_no_longer_used = $SEQUENCE_ID$ is no longer used for DB access
 label.SEQUENCE_ID_for_DB_ACCESSION1 = Please review your URL links in the 'Connections' tab of the Preferences window:
 label.SEQUENCE_ID_for_DB_ACCESSION2 = URL links using '$SEQUENCE_ID$' for DB accessions now use '$DB_ACCESSION$'.
 label.do_not_display_again = Do not display this message again
-exception.url_cannot_have_miriam_id = {0} is a MIRIAM id and cannot be used as a custom url name
 exception.url_cannot_have_duplicate_id = {0} cannot be used as a label for more than one line
-label.filter = Filter text:
 action.customfilter = Custom only
 action.showall = Show All
 label.insert = Insert:
@@ -1298,14 +1296,70 @@ label.database = Database
 label.urltooltip = Only one url, which must use a sequence id, can be selected for the 'On Click' option
 label.edit_sequence_url_link = Edit sequence URL link
 warn.name_cannot_be_duplicate = User-defined URL names must be unique and cannot be MIRIAM ids
-label.invalid_name = Invalid Name !
 label.output_seq_details = Output Sequence Details to list all database references
 label.urllinks = Links
+label.default_cache_size = Default Cache Size
+action.clear_cached_items = Clear Cached Items
 label.togglehidden = Show hidden regions
 label.quality_descr = Alignment Quality based on Blosum62 scores
 label.conservation_descr = Conservation of total alignment less than {0}% gaps
 label.consensus_descr = PID
 label.complement_consensus_descr = PID for cDNA
 label.strucconsensus_descr = PID for base pairs
-label.occupancy_descr = Number of aligned positions
+label.occupancy_descr = Number of aligned positions 
+label.show_experimental = Enable experimental features
+label.show_experimental_tip = Enable any new and currently 'experimental' features (see Latest Release Notes for details)
 label.warning_hidden = Warning: {0} {1} is currently hidden
+label.overview_settings = Overview settings
+label.ov_legacy_gap = Use legacy gap colouring (gaps are white)
+label.gap_colour = Gap colour:
+label.ov_show_hide_default = Show hidden regions when opening overview
+label.hidden_colour = Hidden colour:
+label.select_gap_colour = Select gap colour
+label.select_hidden_colour = Select hidden colour
+label.overview = Overview
+label.reset_to_defaults = Reset to defaults
+label.oview_calc = Recalculating overview...
+label.feature_details = Feature details
+label.matchCondition_contains = Contains
+label.matchCondition_notcontains = Does not contain
+label.matchCondition_matches = Matches
+label.matchCondition_notmatches = Does not match
+label.matchCondition_present = Is present
+label.matchCondition_notpresent = Is not present
+label.matchCondition_eq = =
+label.matchCondition_ne = not =
+label.matchCondition_lt = <
+label.matchCondition_le = <=
+label.matchCondition_gt = >
+label.matchCondition_ge = >=
+label.numeric_required = The value should be numeric
+label.filter = Filter
+label.filters = Filters
+label.join_conditions = Join conditions with
+label.score = Score
+label.colour_by_label = Colour by label
+label.variable_colour = Variable colour...
+label.select_colour = Select colour
+option.enable_disable_autosearch = When ticked, search is performed automatically
+option.autosearch = Autosearch
+label.retrieve_ids = Retrieve IDs
+label.display_settings_for = Display settings for {0} features
+label.simple = Simple
+label.simple_colour = Simple Colour
+label.colour_by_text = Colour by text
+label.graduated_colour = Graduated Colour
+label.by_text_of = By text of
+label.by_range_of = By range of
+label.or = Or
+label.and = And
+label.sequence_feature_colours = Sequence Feature Colours
+label.best_quality = Best Quality
+label.best_resolution = Best Resolution
+label.most_protein_chain = Most Protein Chain
+label.most_bound_molecules = Most Bound Molecules
+label.most_polymer_residues = Most Polymer Residues
+label.cached_structures = Cached Structures
+label.free_text_search = Free Text Search
+label.configuration = Configuration
+label.configure_feature_tooltip = Click to configure variable colour or filters