X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=runner%2Fcompbio%2Frunner%2Fpredictors%2FJpred.java;fp=runner%2Fcompbio%2Frunner%2Fpredictors%2FJpred.java;h=4d94620190bf6b37d87346ad8f3a80c1eb86b0b3;hb=2a4439190b9b6cf0f881d5d07531c25b057117d6;hp=0e08e0a9aafd0a48a0059f907b9a27e1b2bb1711;hpb=d32ee68d6295b36d77bd115b1fb0af2068f29837;p=jabaws.git

diff --git a/runner/compbio/runner/predictors/Jpred.java b/runner/compbio/runner/predictors/Jpred.java
index 0e08e0a..4d94620 100644
--- a/runner/compbio/runner/predictors/Jpred.java
+++ b/runner/compbio/runner/predictors/Jpred.java
@@ -65,6 +65,7 @@ public class Jpred extends SkeletalExecutable<Jpred> {
 		addParameters(Arrays.asList("-logfile " + STAT_FILE));
 		addParameters(Arrays.asList("-dbpath " + dbpath));
 		addParameters(Arrays.asList("-dbname " + dbname));
+		addParameters(Arrays.asList("-jabaws"));
 	}
 
 	// HashMap<Method, float[]>