X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=schemas%2FJalviewUserColours.xsd;h=50f0479886fc310bbae4f20bbf64a97dad77edbc;hb=5d003f492184b893aa4c2f437c6021626b573c45;hp=9cc70836f3da5598769611df14dc8748016695ff;hpb=ab7590e6d0bbb8764d8df5bfcfa55956d80a4ac9;p=jalview.git

diff --git a/schemas/JalviewUserColours.xsd b/schemas/JalviewUserColours.xsd
index 9cc7083..50f0479 100755
--- a/schemas/JalviewUserColours.xsd
+++ b/schemas/JalviewUserColours.xsd
@@ -16,7 +16,13 @@
   
   You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
 -->
+<!-- 
+	Java JAXB binding classes are generated by running command line tool xjc:
+ 	    xjc schemas/jalview.xsd -d src -p jalview.xml.binding.jalview
+ 	Note this also generates code for included schemas
+-->
 <xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:jalview="www.jalview.org/colours" targetNamespace="www.jalview.org/colours">
+	<xs:element name="JalviewUserColours" type="jalview:JalviewUserColours" />
 	<xs:complexType name="JalviewUserColours">
 		<xs:sequence>
 			<xs:element name="Version" maxOccurs="1" minOccurs="0" type="xs:string">
@@ -42,27 +48,8 @@
 					</xs:attribute>
 					<xs:attribute name="RGB" type="xs:string" use="required"/>
 					<xs:attribute name="minRGB" type="xs:string" use="optional"/>
-					<xs:attribute name="noValueColour" use="optional" default="Min">
-					    	<xs:annotation>
-					    		<xs:documentation>Colour if no attribute or score value</xs:documentation>
-					    	</xs:annotation>
-						<xs:simpleType> 
-							<xs:restriction base="xs:string">
-						      <xs:enumeration value="None" />
-						      <xs:enumeration value="Min" />
-						      <xs:enumeration value="Max" />
-						    </xs:restriction>	
-					    </xs:simpleType> 
-					</xs:attribute>
-					<xs:attribute name="threshType" use="optional">
-						<xs:simpleType> 
-							<xs:restriction base="xs:string">
-						      <xs:enumeration value="NONE" />
-						      <xs:enumeration value="ABOVE" />
-						      <xs:enumeration value="BELOW" />
-						    </xs:restriction>	
-					    </xs:simpleType> 
-					</xs:attribute>
+					<xs:attribute name="noValueColour" use="optional" type="jalview:NoValueColour" default="Min" />
+					<xs:attribute name="threshType" use="optional" type="jalview:ThresholdType" />
 					<xs:attribute name="threshold" type="xs:float" use="optional"/>
 					<xs:attribute name="max" type="xs:float" use="optional"/>
 					<xs:attribute name="min" type="xs:float" use="optional"/>
@@ -113,15 +100,41 @@
 	    <xs:element name="condition" type="xs:string" /> 
 	    <xs:element name="value" type="xs:string" /> 
 	  </xs:sequence>
-	  <xs:attribute name="by">
-		<xs:simpleType> 
-			<xs:restriction base="xs:string">
-		      <xs:enumeration value="byLabel" />
-		      <xs:enumeration value="byScore" />
-		      <xs:enumeration value="byAttribute" />
-		    </xs:restriction>	
-	    </xs:simpleType> 
-	  </xs:attribute> 
-	</xs:complexType> 
+	  <xs:attribute name="by" type="jalview:FilterBy" />
+	</xs:complexType>
+
+	<xs:simpleType name="ThresholdType">
+		<xs:annotation>
+			<xs:documentation>Whether filter has a threshold, and if so is it
+				above or below
+			</xs:documentation>
+		</xs:annotation>
+		<xs:restriction base="xs:string">
+			<xs:enumeration value="NONE" />
+			<xs:enumeration value="ABOVE" />
+			<xs:enumeration value="BELOW" />
+		</xs:restriction>
+	</xs:simpleType>
+	
+	<xs:simpleType name="FilterBy">
+	    	<xs:annotation>
+	    		<xs:documentation>Filter may apply to label, score or some feature attribute</xs:documentation>
+	    	</xs:annotation>
+		<xs:restriction base="xs:string">
+	      <xs:enumeration value="byLabel" />
+	      <xs:enumeration value="byScore" />
+	      <xs:enumeration value="byAttribute" />
+	    </xs:restriction>	
+	</xs:simpleType>
 	
+	<xs:simpleType name="NoValueColour">
+	    	<xs:annotation>
+	    		<xs:documentation>Graduated feature colour if no score (or attribute) value</xs:documentation>
+	    	</xs:annotation>
+		<xs:restriction base="xs:string">
+	      <xs:enumeration value="None" />
+	      <xs:enumeration value="Min" />
+	      <xs:enumeration value="Max" />
+	    </xs:restriction>	
+	</xs:simpleType>
 </xs:schema>