X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=sources%2Fmulticoil%2Fscio.h;fp=sources%2Fmulticoil%2Fscio.h;h=6f210cc3797e42465d9a5644691cb4a94f26b265;hb=81362e35a140cd040e948b921053e74267f8a6e3;hp=0000000000000000000000000000000000000000;hpb=2cf032f4b987ba747c04159965aed78e3820d942;p=jpred.git

diff --git a/sources/multicoil/scio.h b/sources/multicoil/scio.h
new file mode 100644
index 0000000..6f210cc
--- /dev/null
+++ b/sources/multicoil/scio.h
@@ -0,0 +1,62 @@
+/*  Bonnie Berger, David Wilson and Theodore Tonchev 1992  */
+/*      C Header File       */
+/*  If __scio_h__ is NOT yet defined, scio.h defines the function   */
+/*  names in scio.c.  These functions are for reading/writing data, */
+/*  inputting sequences, and converting between residue names and   */
+/*  numbers, and between position letters and numbers.              */
+
+
+#ifndef __scio_h__
+#define __scio_h__ 1
+
+#include "scconst.h"
+
+/* Function Prototypes */
+FILE *sopen(char*, char*);
+void sclose(FILE *);
+
+void open_file(FILE **, char*, char*);
+
+void writegenfreq(FILE* fl, 
+		  long totals[], long freqs[AANUM], 
+		  long totalp[POSNUM], long freqp[AANUM][AANUM][POSNUM],
+		  FILE* flog);
+
+void readgenfreq(FILE* fl, 
+		 long totals[], long freqs[AANUM], 
+		 long totalp[POSNUM], long freqp[AANUM*AANUM*POSNUM],
+		 FILE* flog);
+
+void writeposfreq(FILE* fl,
+		  long totals[POSNUM], long freqs[AANUM][POSNUM],
+		  long totalp[POSNUM][POSNUM], 
+		  long freqp[AANUM][AANUM][POSNUM][POSNUM],
+		  FILE* flog);
+
+void readposfreq(FILE* fl,
+		 long totals[POSNUM], long freqs[AANUM*POSNUM],
+		 long totalp[POSNUM*POSNUM], 
+		 long freqp[AANUM*AANUM*POSNUM*POSNUM],
+		 FILE* flog);
+
+int getseq(FILE* fl, char seq[MAXSEQLEN], int* offset, int* seqlen, 
+	   char *title);
+
+#include "sc.h"
+
+int  getseq2 (FILE* fl, Sequence *sequence);
+
+
+char aanum(char ch);
+char aanum2(char ch);
+char numaa(char ch);
+
+char posnum(char ch);
+
+char numpos(char ch);
+
+#endif   /* __scio_h__ */
+
+/*       End of Code       */
+
+