X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=sources%2Fmulticoil%2Fscscore.h;fp=sources%2Fmulticoil%2Fscscore.h;h=b55edce2aa387a10e718b8a33c8b766ee337afb9;hb=1431c641556befdbff5922788061394f2c870a80;hp=0000000000000000000000000000000000000000;hpb=4e8f16a99a41f25bcaf0772796d4d3b8f63aa38f;p=jpred.git

diff --git a/sources/multicoil/scscore.h b/sources/multicoil/scscore.h
new file mode 100644
index 0000000..b55edce
--- /dev/null
+++ b/sources/multicoil/scscore.h
@@ -0,0 +1,53 @@
+/*  Bonnie Berger, David Wilson and Theodore Tonchev 1992  */
+/*      C Header File.  modified Ethan Wolf 1995     */
+/*  Defines the names of functions used in scscore.c.     */
+
+#ifndef __scscore_h__
+#define __scscore_h__ 1
+
+#include "scconst.h"
+
+
+/* Procedure Prototypes */
+
+double getdlog(double num);
+
+int calcgprobs(long freqs[AANUM], long totals, 
+	      double probs[NUM_RES_TYPE]);
+
+int calcgprobp(long freqp[AANUM][AANUM][POSNUM], 
+	      long totalp[POSNUM],
+	      double probp[NUM_RES_TYPE][NUM_RES_TYPE][POSNUM]);
+
+int calcpprobs(long freqs[AANUM][POSNUM], long totals[POSNUM], 
+	      double probs[NUM_RES_TYPE][POSNUM],
+	       int ProlineFreeWin);
+
+
+int calcpprobp(long freqp[AANUM][AANUM][POSNUM][POSNUM], 
+	      long totalp[POSNUM][POSNUM],
+	      double probs[NUM_RES_TYPE][POSNUM],
+	      double probp[NUM_RES_TYPE][NUM_RES_TYPE][POSNUM][POSNUM],
+	      int ProlineFreeWin);
+
+
+int scorestock(char seq[MAXSEQLEN], int seqlen,
+	       double scores[MAXSEQLEN][POSNUM],
+	       char offsets[MAXSEQLEN],
+	       double *maxscore, int ProlineFreeWin, int stockstock);
+
+int scoreseq(char seq[MAXSEQLEN], int seqlen,
+	     double scores[MAXSEQLEN],
+	     char offsets[MAXSEQLEN],
+	     double *maxscore);
+
+
+int scseqadj(char lib[MAXFUNCTNUM],
+	     char seq[MAXSEQLEN], int seqlen,
+	     double gscores[MAXSEQLEN][POSNUM],
+	     char goffsets[MAXSEQLEN],
+	     double *maxscore, int mode, int differentiator);
+
+#endif   /* __scscore_h__ */
+
+/*       End of Code       */