X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=sources%2Fncoils%2Fncoils.h;fp=sources%2Fncoils%2Fncoils.h;h=362718a4984360fb3b4bbf404070442a9a59fa6a;hb=81362e35a140cd040e948b921053e74267f8a6e3;hp=0000000000000000000000000000000000000000;hpb=2cf032f4b987ba747c04159965aed78e3820d942;p=jpred.git

diff --git a/sources/ncoils/ncoils.h b/sources/ncoils/ncoils.h
new file mode 100644
index 0000000..362718a
--- /dev/null
+++ b/sources/ncoils/ncoils.h
@@ -0,0 +1,29 @@
+#include <stdio.h>
+#include <stdlib.h>
+#include <math.h>
+
+#define AAs "A_CDEFGHI_KLMN_PQRST_VW_Y_"
+#define PI  3.1415
+
+/* Include file for Ncoils */
+
+struct hept_pref {
+	float **m;		/* 20 x 7 amino acid heptad weights */
+	float smallest;		/* Smallest of the above */
+	int n;			/* statistical fitting data (weighted) */
+	struct fit_dat *f;
+};
+
+struct fit_dat {
+	int win;		/* Window length */
+	float m_cc, sd_cc;	/* mean/sd for coiled-coils */
+	float m_g,  sd_g;	/* mean/sd for globular */
+	float sc;		/* scaling factor */
+	int w;			/* 1= weighted, 0=un-weighted */
+};
+
+
+struct hept_pref *read_matrix(FILE *MAT);
+void exit_error();
+void pred_coils(char *seq,char *ident,char *title,struct hept_pref *h,int win,int which,
+   int weighted,int fasta,float min_P, int *t, int *tc, int min_segs);