X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2FMCview%2FAtom.java;fp=src%2FMCview%2FAtom.java;h=68a7c21e53bf0244449e1096b4a4a33466031ecb;hb=da3a1b89b39a9b7b328e08f622d8f5aa1f6358e4;hp=894984a630c12fdcfdc6fecb10e2f2c793318f18;hpb=46371d4ca5cf65bf625cb98a09817a84ebf869c0;p=jalview.git

diff --git a/src/MCview/Atom.java b/src/MCview/Atom.java
index 894984a..68a7c21 100755
--- a/src/MCview/Atom.java
+++ b/src/MCview/Atom.java
@@ -20,6 +20,8 @@
  */
 package MCview;
 
+import jalview.schemes.ResidueProperties;
+
 import java.awt.Color;
 
 public class Atom
@@ -73,6 +75,8 @@ public class Atom
     name = str.substring(12, 15).trim();
 
     resName = str.substring(17, 20);
+    // JAL-1828 treat MSE Selenomethionine as MET (etc)
+    resName = ResidueProperties.getCanonicalAminoAcid(resName);
 
     chain = str.substring(21, 22);