X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2FMCview%2FPDBChain.java;h=49d7d4a429c094db5a3ca85a8f74468b5722422f;hb=3ad07b11cf5c6c2a763fa9661252bb29ac4bc132;hp=8812dcc47a6a95680616c1c3533cd727fa79f5b7;hpb=b7bcefd67d59442fb18402fe3fb7f9dad945dbaf;p=jalview.git

diff --git a/src/MCview/PDBChain.java b/src/MCview/PDBChain.java
index 8812dcc..49d7d4a 100755
--- a/src/MCview/PDBChain.java
+++ b/src/MCview/PDBChain.java
@@ -522,6 +522,7 @@ public class PDBChain
                   ana.getCalcId(), ana.label);
           if (transfer == null || transfer.size() == 0)
           {
+            ana = new AlignmentAnnotation(ana);
             ana.liftOver(sequence, shadowMap);
             ana.liftOver(dsq, sqmpping);
             dsq.addAlignmentAnnotation(ana);
@@ -542,6 +543,7 @@ public class PDBChain
                     .getAlignmentAnnotations(ana.getCalcId(), ana.label);
             if (transfer == null || transfer.size() == 0)
             {
+              ana = new AlignmentAnnotation(ana);
               ana.liftOver(dsq, sqmpping);
               // mapping.transfer(ana);
             }