X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2FMCview%2FPDBfile.java;fp=src%2FMCview%2FPDBfile.java;h=6d3d342a886537f06784ebac120a60d20a51e47c;hb=2595e9d4ee0dbbd3406a98c4e49a61ccde806479;hp=f5a0255094f23ab858ddb3bb5b9df9a7e232aad6;hpb=e20075ba805d744d7cc4976e2b8d5e5840fb0a8d;p=jalview.git

diff --git a/src/MCview/PDBfile.java b/src/MCview/PDBfile.java
index f5a0255..6d3d342 100755
--- a/src/MCview/PDBfile.java
+++ b/src/MCview/PDBfile.java
@@ -23,6 +23,7 @@ package MCview;
 import jalview.datamodel.AlignmentAnnotation;
 import jalview.datamodel.DBRefSource;
 import jalview.datamodel.SequenceI;
+import jalview.io.DataSourceType;
 import jalview.io.FileParse;
 import jalview.io.StructureFile;
 import jalview.util.MessageManager;
@@ -46,10 +47,11 @@ public class PDBfile extends StructureFile
   }
 
   public PDBfile(boolean addAlignmentAnnotations, boolean predictSecStr,
-          boolean externalSecStr, String dataObject, String protocol)
+          boolean externalSecStr, String dataObject,
+          DataSourceType sourceType)
           throws IOException
   {
-    super(false, dataObject, protocol);
+    super(false, dataObject, sourceType);
     addSettings(addAlignmentAnnotations, predictSecStr, externalSecStr);
     doParse();
   }
@@ -63,7 +65,7 @@ public class PDBfile extends StructureFile
   }
 
   @Override
-  public String print()
+  public String print(SequenceI[] seqs, boolean jvSuffix)
   {
     return null;
   }