X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2FMCview%2FResidue.java;h=66ae7acfe5d9ece3ce2b98ac93b8a4144175f9b2;hb=c19d2a91ca05e052e3408bf5852d88eb5d0608f1;hp=e99c746324975fc4bc52b4890c9c5d7051db008a;hpb=dd74fc4938723fe5ec48d4e5fdcfbe58ac42a48d;p=jalview.git

diff --git a/src/MCview/Residue.java b/src/MCview/Residue.java
index e99c746..66ae7ac 100755
--- a/src/MCview/Residue.java
+++ b/src/MCview/Residue.java
@@ -1,49 +1,52 @@
-/*
- * Jalview - A Sequence Alignment Editor and Viewer
- * Copyright (C) 2007 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
- *
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 2
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
- */
-package MCview;
-
-import java.util.*;
-
-public class Residue
-{
-  Vector atoms = new Vector();
-  int number;
-  int count;
-  int seqnumber;
-
-  public Residue(Vector atoms, int number, int count)
-  {
-    this.atoms = atoms;
-    this.number = number;
-    this.count = count;
-  }
-
-  public Atom findAtom(String name)
-  {
-    for (int i = 0; i < atoms.size(); i++)
-    {
-      if ( ( (Atom) atoms.elementAt(i)).name.equals(name))
-      {
-        return (Atom) atoms.elementAt(i);
-      }
-    }
-
-    return null;
-  }
-}
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2)
+ * Copyright (C) 2015 The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
+package MCview;
+
+import java.util.Vector;
+
+public class Residue
+{
+  Vector<Atom> atoms;
+
+  int number;
+
+  int count;
+
+  public Residue(Vector<Atom> resAtoms, int number, int count)
+  {
+    this.atoms = resAtoms;
+    this.number = number;
+    this.count = count;
+  }
+
+  public Atom findAtom(String name)
+  {
+    for (Atom atom : atoms)
+    {
+      if (atom.name.equals(name))
+      {
+        return atom;
+      }
+    }
+
+    return null;
+  }
+}