X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fanalysis%2FAAFrequency.java;fp=src%2Fjalview%2Fanalysis%2FAAFrequency.java;h=f1d5e79caedf2d05bc8280daede25327e2652d01;hb=e086b0c30bee5fe084186c65ef1ded42c58560f9;hp=e4f2dfa01a9e41cc2b945dbe5c6e573e85ed0818;hpb=e51f922b88b1f316e27cf4c19eef437ff592d74d;p=jalview.git

diff --git a/src/jalview/analysis/AAFrequency.java b/src/jalview/analysis/AAFrequency.java
index e4f2dfa..f1d5e79 100755
--- a/src/jalview/analysis/AAFrequency.java
+++ b/src/jalview/analysis/AAFrequency.java
@@ -531,7 +531,7 @@ public class AAFrequency
     for (int col = 0; col < cols; col++)
     {
       // todo would prefer a Java bean for consensus data
-      Hashtable<String, int[]> columnHash = new Hashtable<String, int[]>();
+      Hashtable<String, int[]> columnHash = new Hashtable<>();
       // #seqs, #ungapped seqs, counts indexed by (codon encoded + 1)
       int[] codonCounts = new int[66];
       codonCounts[0] = alignment.getSequences().size();
@@ -551,6 +551,7 @@ public class AAFrequency
           {
             codonCounts[codonEncoded + 2]++;
             ungappedCount++;
+            break;
           }
         }
       }