X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fanalysis%2FAlignSeq.java;h=ba7e520e4be08450e63f262e892dbb8a41cfb007;hb=13317fa1bc7bf640dc1967ce4438676e89390ad3;hp=307a06fa7e728beff858393adb92c98a6f140521;hpb=b8eecc11ecdeebc95f00014b5e588a583211ea32;p=jalview.git

diff --git a/src/jalview/analysis/AlignSeq.java b/src/jalview/analysis/AlignSeq.java
index 307a06f..ba7e520 100755
--- a/src/jalview/analysis/AlignSeq.java
+++ b/src/jalview/analysis/AlignSeq.java
@@ -1153,7 +1153,7 @@ public class AlignSeq
               ap++;
             }
           }
-          if (sq.getAnnotation() != null)
+          if (sq.getAnnotation() != null && sq.getAnnotation().length > 0)
           {
             annotations.addAll(inspos, Arrays.asList(sq.getAnnotation()));
           }