X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fanalysis%2FAlignmentSorter.java;fp=src%2Fjalview%2Fanalysis%2FAlignmentSorter.java;h=81bddc2ebd637e7908687360a56e373447ce83e1;hb=9c98d4bd666346f6ad3892c5394b7da3be82d93e;hp=b88ef3a128f19e955e593e5a0a23a0e4bfdf8a1c;hpb=c7b2143c9cf7c5e05ad63251f7d3910751b16d20;p=jalview.git

diff --git a/src/jalview/analysis/AlignmentSorter.java b/src/jalview/analysis/AlignmentSorter.java
index b88ef3a..81bddc2 100755
--- a/src/jalview/analysis/AlignmentSorter.java
+++ b/src/jalview/analysis/AlignmentSorter.java
@@ -708,14 +708,15 @@ public class AlignmentSorter
     if (method != FEATURE_SCORE && method != FEATURE_LABEL
             && method != FEATURE_DENSITY)
     {
-      String msg = String
-              .format("Implementation Error - sortByFeature method must be either '%s' or '%s'",
-                      FEATURE_SCORE, FEATURE_DENSITY);
+      String msg = String.format(
+              "Implementation Error - sortByFeature method must be either '%s' or '%s'",
+              FEATURE_SCORE, FEATURE_DENSITY);
       System.err.println(msg);
       return;
     }
 
-    flipFeatureSortIfUnchanged(method, featureTypes, groups, startCol, endCol);
+    flipFeatureSortIfUnchanged(method, featureTypes, groups, startCol,
+            endCol);
 
     SequenceI[] seqs = alignment.getSequencesArray();
 
@@ -734,8 +735,8 @@ public class AlignmentSorter
        * get sequence residues overlapping column region
        * and features for residue positions and specified types
        */
-      String[] types = featureTypes == null ? null : featureTypes
-              .toArray(new String[featureTypes.size()]);
+      String[] types = featureTypes == null ? null
+              : featureTypes.toArray(new String[featureTypes.size()]);
       List<SequenceFeature> sfs = seqs[i].findFeatures(startCol + 1,
               endCol + 1, types);