X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fanalysis%2FAlignmentUtils.java;h=e2f674968cedbaa32325d5c6cc7316389ad8b6f7;hb=e4080c73e444d415208049ff38f3b26041b071bf;hp=37f225c02aa70867c3041652349bc6914a2dc797;hpb=2c2992b8822b686f7f12022a66aa41f6969d06d0;p=jalview.git

diff --git a/src/jalview/analysis/AlignmentUtils.java b/src/jalview/analysis/AlignmentUtils.java
index 37f225c..e2f6749 100644
--- a/src/jalview/analysis/AlignmentUtils.java
+++ b/src/jalview/analysis/AlignmentUtils.java
@@ -2552,6 +2552,7 @@ public class AlignmentUtils
     int width = columnMap.size();
     char gap = unaligned.getGapCharacter();
     int realignedCount = 0;
+    // TODO: verify this loop scales sensibly for very wide/high alignments
 
     for (SequenceI seq : unaligned.getSequences())
     {