X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fanalysis%2FAverageDistanceTree.java;fp=src%2Fjalview%2Fanalysis%2FAverageDistanceTree.java;h=c7266271122bf20be666d8368e89042e2246651a;hb=2dd39c36211f947fda099c550e711ef5905efefd;hp=907109e6d39a6429fc3cb9643efe9297fcc95920;hpb=4dd40d33a5becefd51c31a426f2501b21029f82c;p=jalview.git diff --git a/src/jalview/analysis/AverageDistanceTree.java b/src/jalview/analysis/AverageDistanceTree.java index 907109e..c726627 100644 --- a/src/jalview/analysis/AverageDistanceTree.java +++ b/src/jalview/analysis/AverageDistanceTree.java @@ -1,3 +1,23 @@ +/* + * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) + * Copyright (C) $$Year-Rel$$ The Jalview Authors + * + * This file is part of Jalview. + * + * Jalview is free software: you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation, either version 3 + * of the License, or (at your option) any later version. + * + * Jalview is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty + * of MERCHANTABILITY or FITNESS FOR A PARTICULAR + * PURPOSE. See the GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License + * along with Jalview. If not, see . + * The Jalview Authors are detailed in the 'AUTHORS' file. + */ package jalview.analysis; import jalview.api.analysis.ScoreModelI; @@ -46,8 +66,8 @@ public class AverageDistanceTree extends TreeBuilder { if ((l != i) && (l != j)) { - newdist[l] = ((distances.getValue(i, l) * noi) + (distances - .getValue(j, l) * noj)) / (noi + noj); + newdist[l] = ((distances.getValue(i, l) * noi) + + (distances.getValue(j, l) * noj)) / (noi + noj); } else {