X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fanalysis%2FPCA.java;fp=src%2Fjalview%2Fanalysis%2FPCA.java;h=42a168dab78a24d40c6f572fd4e10d404f6dcaab;hb=be762d8d9c71a7aa3121e845c45911c7192b7827;hp=3ec7995f9f67aa84c2553fcd154df0b4c934a223;hpb=d1bb7a31fc091606aedbc255a5766ac79e36fa91;p=jalview.git diff --git a/src/jalview/analysis/PCA.java b/src/jalview/analysis/PCA.java index 3ec7995..42a168d 100755 --- a/src/jalview/analysis/PCA.java +++ b/src/jalview/analysis/PCA.java @@ -43,7 +43,7 @@ public class PCA implements Runnable final private AlignmentView seqs; private ScoreModelI scoreModel; - + private SimilarityParamsI similarityParams; public PCA(AlignmentView s, ScoreModelI sm, SimilarityParamsI options) @@ -51,7 +51,7 @@ public class PCA implements Runnable this.seqs = s; this.similarityParams = options; this.scoreModel = sm; - + details.append("PCA calculation using " + sm.getName() + " sequence similarity matrix\n========\n\n"); } @@ -193,7 +193,8 @@ public class PCA implements Runnable q.printStackTrace(); details.append("\n*** Unexpected exception when performing PCA ***\n" + q.getLocalizedMessage()); - details.append("*** Matrices below may not be fully diagonalised. ***\n"); + details.append( + "*** Matrices below may not be fully diagonalised. ***\n"); } details.append(" --- New diagonalization matrix ---\n");