X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fanalysis%2Fscoremodels%2FSmithWatermanModel.java;h=ca6d27983c9dd221b222a2564392245b776e58d4;hb=3d0101179759ef157b088ea135423cd909512d9f;hp=f88101fee100f13bc98ddafc1d14e623d1f9b8ed;hpb=7c70cb09e9de68ab567e38520d6d09f0c17a3939;p=jalview.git

diff --git a/src/jalview/analysis/scoremodels/SmithWatermanModel.java b/src/jalview/analysis/scoremodels/SmithWatermanModel.java
index f88101f..ca6d279 100644
--- a/src/jalview/analysis/scoremodels/SmithWatermanModel.java
+++ b/src/jalview/analysis/scoremodels/SmithWatermanModel.java
@@ -51,8 +51,8 @@ public class SmithWatermanModel extends SimilarityScoreModel
   public MatrixI findSimilarities(AlignmentView seqData,
           SimilarityParamsI options)
   {
-    SequenceI[] sequenceString = seqData.getVisibleAlignment(
-            Comparison.GAP_SPACE).getSequencesArray();
+    SequenceI[] sequenceString = seqData
+            .getVisibleAlignment(Comparison.GAP_SPACE).getSequencesArray();
     int noseqs = sequenceString.length;
     double[][] distances = new double[noseqs][noseqs];