X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fapi%2FAlignViewportI.java;h=ba3ed7500ef1fe6eb1746a37de5f8db684e1fcbd;hb=refs%2Fheads%2Fspike%2FJAL-4047%2FJAL-4048_columns_in_sequenceID;hp=0cfd03df961163dfe01bce3530716c8921c83319;hpb=471cfb5b0f6bb249e478f0c02d80eeea6a834383;p=jalview.git diff --git a/src/jalview/api/AlignViewportI.java b/src/jalview/api/AlignViewportI.java index 0cfd03d..ba3ed75 100644 --- a/src/jalview/api/AlignViewportI.java +++ b/src/jalview/api/AlignViewportI.java @@ -20,6 +20,13 @@ */ package jalview.api; +import java.awt.Color; +import java.awt.Font; +import java.util.Hashtable; +import java.util.Iterator; +import java.util.List; +import java.util.Map; + import jalview.analysis.Conservation; import jalview.analysis.TreeModel; import jalview.datamodel.AlignmentAnnotation; @@ -37,13 +44,7 @@ import jalview.datamodel.SequenceI; import jalview.renderer.ResidueShaderI; import jalview.schemes.ColourSchemeI; import jalview.viewmodel.ViewportRanges; - -import java.awt.Color; -import java.awt.Font; -import java.util.Hashtable; -import java.util.Iterator; -import java.util.List; -import java.util.Map; +import jalview.viewmodel.seqfeatures.IdColumns; /** * @author jimp @@ -566,5 +567,7 @@ public interface AlignViewportI extends ViewStyleI */ Iterator getViewAsVisibleContigs(boolean selectedRegionOnly); + IdColumns getIdColumns(); + ContactMatrixI getContactMatrix(AlignmentAnnotation alignmentAnnotation); }