X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fapi%2FAlignViewportI.java;h=cec61f46504ff52d22aab5e8899e650251fffb85;hb=a83adb45bdf9554e270921b4baad94defd314b36;hp=dcd325850bf2b212561e6f056239bd84b36ecc40;hpb=d4ec118f86b5c9dee801e743c46aaacc7bb521d1;p=jalview.git

diff --git a/src/jalview/api/AlignViewportI.java b/src/jalview/api/AlignViewportI.java
index dcd3258..cec61f4 100644
--- a/src/jalview/api/AlignViewportI.java
+++ b/src/jalview/api/AlignViewportI.java
@@ -200,6 +200,12 @@ public interface AlignViewportI extends ViewStyleI
    * sub-groups, which may have their own colour schemes). A null value is used
    * for no residue colour (white).
    * 
+   * BH Note: It is critical that any call to
+   * AlignViewportI.setGlobalColourScheme is followed closely, if not
+   * immediately, by a call to AlignPanel.repaint(true, true) so that the
+   * overview is updated. When that happens, the sequence overview color caches
+   * are cleared.
+   * 
    * @param cs
    */
   void setGlobalColourScheme(ColourSchemeI cs);