X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fapi%2FComplexAlignFile.java;fp=src%2Fjalview%2Fapi%2FComplexAlignFile.java;h=0d731cdfc7265545f800da8c65400711471e099d;hb=70f9c4700f20a8fa57ed7eb974277d8bad0723c2;hp=0000000000000000000000000000000000000000;hpb=2564f09af31f666b30fc23889deeff9cd49c68c4;p=jalview.git

diff --git a/src/jalview/api/ComplexAlignFile.java b/src/jalview/api/ComplexAlignFile.java
new file mode 100644
index 0000000..0d731cd
--- /dev/null
+++ b/src/jalview/api/ComplexAlignFile.java
@@ -0,0 +1,17 @@
+package jalview.api;
+
+import jalview.datamodel.ColumnSelection;
+import jalview.datamodel.SequenceI;
+import jalview.schemes.ColourSchemeI;
+
+public interface ComplexAlignFile
+{
+  public boolean isShowSeqFeatures();
+
+  public ColourSchemeI getColourScheme();
+
+  public ColumnSelection getColumnSelection();
+
+  public SequenceI[] getHiddenSequences();
+
+}