X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FAlignFrame.java;fp=src%2Fjalview%2Fappletgui%2FAlignFrame.java;h=2a2fc70d870f905f42fdcc47161a36bb314866d8;hb=afbff636fa2dfa01daa1f4ec4e8a936e61e3cf16;hp=b6f89295e012843d7c3addfa39019b7b40f06231;hpb=c6df3928336440918d23b4e7cb579f134e2f48dd;p=jalview.git

diff --git a/src/jalview/appletgui/AlignFrame.java b/src/jalview/appletgui/AlignFrame.java
index b6f8929..2a2fc70 100644
--- a/src/jalview/appletgui/AlignFrame.java
+++ b/src/jalview/appletgui/AlignFrame.java
@@ -576,8 +576,8 @@ public class AlignFrame extends EmbmenuFrame implements ActionListener,
 
     case KeyEvent.VK_F2:
       viewport.cursorMode = !viewport.cursorMode;
-      setStatus(MessageManager
-              .formatMessage("label.keyboard_editing_mode", new String[]
+      setStatus(MessageManager.formatMessage("label.keyboard_editing_mode",
+              new String[]
               { (viewport.cursorMode ? "on" : "off") }));
       if (viewport.cursorMode)
       {
@@ -1453,9 +1453,9 @@ public class AlignFrame extends EmbmenuFrame implements ActionListener,
     }
     else
     {
-      features = formatter.printGffFormat(viewport.getAlignment()
-              .getSequencesArray(), alignPanel.getFeatureRenderer(), true,
-              false);
+      features = formatter.printGffFormat(
+              viewport.getAlignment().getSequencesArray(),
+              alignPanel.getFeatureRenderer(), true, false);
     }
 
     if (displayTextbox)
@@ -1584,8 +1584,7 @@ public class AlignFrame extends EmbmenuFrame implements ActionListener,
     catch (java.net.MalformedURLException ex)
     {
       url = viewport.applet.getCodeBase() + url;
-    }
-    catch (UnsupportedEncodingException ex)
+    } catch (UnsupportedEncodingException ex)
     {
       System.err.println(
               "WARNING = IMPLEMENTATION ERROR - UNSUPPORTED ENCODING EXCEPTION FOR "
@@ -2358,8 +2357,8 @@ public class AlignFrame extends EmbmenuFrame implements ActionListener,
                 column, al);
       }
 
-      setStatus(MessageManager
-              .formatMessage("label.removed_columns", new String[]
+      setStatus(MessageManager.formatMessage("label.removed_columns",
+              new String[]
               { Integer.valueOf(trimRegion.getSize()).toString() }));
       addHistoryItem(trimRegion);
 
@@ -2402,8 +2401,8 @@ public class AlignFrame extends EmbmenuFrame implements ActionListener,
 
     addHistoryItem(removeGapCols);
 
-    setStatus(MessageManager
-            .formatMessage("label.removed_empty_columns", new String[]
+    setStatus(MessageManager.formatMessage("label.removed_empty_columns",
+            new String[]
             { Integer.valueOf(removeGapCols.getSize()).toString() }));
 
     // This is to maintain viewport position on first residue
@@ -3521,8 +3520,8 @@ public class AlignFrame extends EmbmenuFrame implements ActionListener,
     hydrophobicityColour.setLabel(
             MessageManager.getString("label.colourScheme_hydrophobic"));
     hydrophobicityColour.addActionListener(this);
-    helixColour.setLabel(MessageManager
-            .getString("label.colourScheme_helixpropensity"));
+    helixColour.setLabel(
+            MessageManager.getString("label.colourScheme_helixpropensity"));
     helixColour.addActionListener(this);
     strandColour.setLabel(MessageManager
             .getString("label.colourScheme_strandpropensity"));
@@ -4152,7 +4151,8 @@ public class AlignFrame extends EmbmenuFrame implements ActionListener,
     {
       // register the association(s) and quit, don't create any windows.
       if (StructureSelectionManager.getStructureSelectionManager(applet)
-              .setMapping(seqs, chains, pdb.getFile(), protocol, null) == null)
+              .setMapping(seqs, chains, pdb.getFile(), protocol,
+                      null) == null)
       {
         System.err.println("Failed to map " + pdb.getFile() + " ("
                 + protocol + ") to any sequences");