X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FAlignFrame.java;h=5ad212e8b6ffe11d437ed247cdf31e0495eb71e2;hb=948bd3bcbacc509da0cefaae3eedd97300a6ccce;hp=63f27451c642dfce97a7d64443e893b66f29af10;hpb=a2703f9c2948fba9747b304fed02b7bbc5d32b37;p=jalview.git

diff --git a/src/jalview/appletgui/AlignFrame.java b/src/jalview/appletgui/AlignFrame.java
index 63f2745..5ad212e 100644
--- a/src/jalview/appletgui/AlignFrame.java
+++ b/src/jalview/appletgui/AlignFrame.java
@@ -1445,9 +1445,10 @@ public class AlignFrame extends EmbmenuFrame implements ActionListener,
     FeaturesFile formatter = new FeaturesFile();
     if (format.equalsIgnoreCase("Jalview"))
     {
-      features = formatter.printJalviewFormat(viewport.getAlignment()
-              .getSequencesArray(), getDisplayedFeatureCols(),
-              getDisplayedFeatureGroups(), true);
+      features = formatter.printJalviewFormat(
+              viewport.getAlignment().getSequencesArray(),
+              getDisplayedFeatureCols(), null, getDisplayedFeatureGroups(),
+              true);
     }
     else
     {