X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FAlignFrame.java;h=e8ee82be3ffca470a52b5863fb40a93ab73df6d8;hb=85cb8c77b20b4bcca29ea106aaa20f252a969d34;hp=a8d73eea5ffe63a972c2004ca393a1b0ff6e52ed;hpb=4c3a5f9eeaa18f67dc35f31b18325f73199325f7;p=jalview.git

diff --git a/src/jalview/appletgui/AlignFrame.java b/src/jalview/appletgui/AlignFrame.java
index a8d73ee..e8ee82b 100644
--- a/src/jalview/appletgui/AlignFrame.java
+++ b/src/jalview/appletgui/AlignFrame.java
@@ -75,6 +75,7 @@ import java.awt.BorderLayout;
 import java.awt.Canvas;
 import java.awt.CheckboxMenuItem;
 import java.awt.Color;
+import java.awt.FlowLayout;
 import java.awt.Font;
 import java.awt.FontMetrics;
 import java.awt.Frame;
@@ -83,6 +84,7 @@ import java.awt.Label;
 import java.awt.Menu;
 import java.awt.MenuBar;
 import java.awt.MenuItem;
+import java.awt.Panel;
 import java.awt.event.ActionEvent;
 import java.awt.event.ActionListener;
 import java.awt.event.FocusEvent;
@@ -105,8 +107,6 @@ import java.util.Map;
 import java.util.StringTokenizer;
 import java.util.Vector;
 
-import javax.swing.JOptionPane;
-
 import org.jmol.viewer.Viewer;
 
 public class AlignFrame extends EmbmenuFrame implements ActionListener,
@@ -2070,19 +2070,25 @@ public class AlignFrame extends EmbmenuFrame implements ActionListener,
 
     /*
      * If the cut affects all sequences, warn, remove highlighted columns
-     */if (sg.getSize() == viewport.getAlignment().getHeight())
+     */
+    if (sg.getSize() == viewport.getAlignment().getHeight())
     {
       boolean isEntireAlignWidth = (((sg.getEndRes() - sg.getStartRes()) + 1) == viewport
               .getAlignment().getWidth()) ? true : false;
       if (isEntireAlignWidth)
       {
-        int confirm = JOptionPane.showConfirmDialog(this,
-                MessageManager.getString("warn.delete_all"), // $NON-NLS-1$
-                MessageManager.getString("label.delete_all"), // $NON-NLS-1$
-                JOptionPane.OK_CANCEL_OPTION);
 
-        if (confirm == JOptionPane.CANCEL_OPTION
-                || confirm == JOptionPane.CLOSED_OPTION)
+        String title = MessageManager.getString("label.delete_all");
+        Panel mp = new Panel();
+        mp.setLayout(new FlowLayout());
+        mp.add(new Label(MessageManager.getString("warn.delete_all")));
+
+        final JVDialog dialog = new JVDialog(this, title, true, 400,
+                200);
+        dialog.setMainPanel(mp);
+        dialog.setVisible(true);
+
+        if (!dialog.accept)
         {
           return;
         }