X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FAlignViewport.java;fp=src%2Fjalview%2Fappletgui%2FAlignViewport.java;h=b0e29dae54974c77995d359f182e021ec852e103;hb=f69e96788c2ae3a08f56c4461d8d197a3b3a06a2;hp=2d3800879e1ddfef2a95c0a6b95b99978d1124f4;hpb=7f61a28aad5fe2ef3df8aa4024ea3e7d8fbe1548;p=jalview.git

diff --git a/src/jalview/appletgui/AlignViewport.java b/src/jalview/appletgui/AlignViewport.java
index 2d38008..b0e29da 100644
--- a/src/jalview/appletgui/AlignViewport.java
+++ b/src/jalview/appletgui/AlignViewport.java
@@ -157,6 +157,9 @@ public class AlignViewport extends AlignmentViewport implements
       setShowUnconserved(applet.getDefaultParameter("showUnconserved",
               getShowUnconserved()));
 
+      setScaleProteinAsCdna(applet.getDefaultParameter(
+              "scaleProteinAsCdna", isScaleProteinAsCdna()));
+
       String param = applet.getParameter("upperCase");
       if (param != null)
       {