X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FAnnotationPanel.java;fp=src%2Fjalview%2Fappletgui%2FAnnotationPanel.java;h=22996f7556b10f88e1fbf60db8ea3755f2a64546;hb=cce1680b94df1b7b8dfa321873936e2b870501bc;hp=4b9fa679f5d1254be3eca9543abcd27bc1f82bb5;hpb=d8ce3040f4e2dfdd3a3607ea981c5fe952a9a7a0;p=jalview.git

diff --git a/src/jalview/appletgui/AnnotationPanel.java b/src/jalview/appletgui/AnnotationPanel.java
index 4b9fa67..22996f7 100755
--- a/src/jalview/appletgui/AnnotationPanel.java
+++ b/src/jalview/appletgui/AnnotationPanel.java
@@ -256,7 +256,9 @@ public class AnnotationPanel extends Panel implements AwtRenderPanelI,
           anot[index] = new Annotation(label, "", type, 0);
         }
 
-        anot[index].secondaryStructure = type;
+        
+        anot[index].secondaryStructure = type != 'S' ? type : label
+                .length() == 0 ? ' ' : label.charAt(0);
         anot[index].displayCharacter = label;
       }
     }