X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FFeatureSettings.java;fp=src%2Fjalview%2Fappletgui%2FFeatureSettings.java;h=1b9fbf9db0c479ce77cb9b60c942c0def6c21117;hb=3d2b5edf9ea33c6ebbde4717ccc14f03554fb6f0;hp=2c454a40105db7b5808c2e5dcd2f95c854157ecb;hpb=734d0e761fda32cebaae59c370c5d64e1e8c99e8;p=jalview.git

diff --git a/src/jalview/appletgui/FeatureSettings.java b/src/jalview/appletgui/FeatureSettings.java
index 2c454a4..1b9fbf9 100755
--- a/src/jalview/appletgui/FeatureSettings.java
+++ b/src/jalview/appletgui/FeatureSettings.java
@@ -696,8 +696,7 @@ public class FeatureSettings extends Panel implements ItemListener,
   public void adjustmentValueChanged(AdjustmentEvent evt)
   {
     fr.setTransparency((100 - transparency.getValue()) / 100f);
-    ap.seqPanel.seqCanvas.repaint();
-
+    ap.paintAlignment(true);
   }
 
   class MyCheckbox extends Checkbox