X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FFeatureSettings.java;h=7db1fbe4b7cdac2a3cb9dd3bb642209d5ec76dd3;hb=1a34e43f7fb8e6d4f559026c6f0a207893124c6d;hp=39a274785cd326ba4d3aec838c7640ccb1a5bd3a;hpb=8690631b5afe2db0a06ef1b074d2633598c403ae;p=jalview.git

diff --git a/src/jalview/appletgui/FeatureSettings.java b/src/jalview/appletgui/FeatureSettings.java
index 39a2747..7db1fbe 100755
--- a/src/jalview/appletgui/FeatureSettings.java
+++ b/src/jalview/appletgui/FeatureSettings.java
@@ -20,15 +20,12 @@
  */
 package jalview.appletgui;
 
-import static jalview.viewmodel.seqfeatures.FeatureRendererModel.COLOUR_COLUMN;
-import static jalview.viewmodel.seqfeatures.FeatureRendererModel.SHOW_COLUMN;
-import static jalview.viewmodel.seqfeatures.FeatureRendererModel.TYPE_COLUMN;
-
 import jalview.api.FeatureColourI;
 import jalview.api.FeatureSettingsControllerI;
 import jalview.datamodel.AlignmentI;
 import jalview.datamodel.SequenceI;
 import jalview.util.MessageManager;
+import jalview.viewmodel.seqfeatures.FeatureRendererModel.FeatureSettingsBean;
 
 import java.awt.BorderLayout;
 import java.awt.Button;
@@ -71,6 +68,12 @@ public class FeatureSettings extends Panel
         implements ItemListener, MouseListener, MouseMotionListener,
         ActionListener, AdjustmentListener, FeatureSettingsControllerI
 {
+  private static final int TYPE_COLUMN = 0;
+
+  private static final int COLOUR_COLUMN = 1;
+
+  private static final int SHOW_COLUMN = 2;
+
   FeatureRenderer fr;
 
   AlignmentPanel ap;
@@ -607,11 +610,27 @@ public class FeatureSettings extends Panel
     Object[][] data = new Object[tmpSize][columnCount];
     System.arraycopy(tmp, 0, data, 0, tmpSize);
 
-    fr.setFeaturePriority(data);
+    fr.setFeaturePriority(getTableAsBeans(data));
 
     ap.paintAlignment(updateOverview, updateOverview);
   }
 
+  /**
+   * Converts table data into an array of data beans
+   */
+  private FeatureSettingsBean[] getTableAsBeans(Object[][] data)
+  {
+    FeatureSettingsBean[] rowData = new FeatureSettingsBean[data.length];
+    for (int i = 0; i < data.length; i++)
+    {
+      String type = (String) data[i][TYPE_COLUMN];
+      FeatureColourI colour = (FeatureColourI) data[i][COLOUR_COLUMN];
+      Boolean isShown = (Boolean) data[i][SHOW_COLUMN];
+      // feature filter set to null as not (yet) offered in applet
+      rowData[i] = new FeatureSettingsBean(type, colour, null, isShown);
+    }
+    return rowData;
+  }
   MyCheckbox selectedCheck;
 
   boolean dragging = false;