X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fappletgui%2FPairwiseAlignPanel.java;fp=src%2Fjalview%2Fappletgui%2FPairwiseAlignPanel.java;h=bc775c63af1083cb7714efd23cec4c720d9bc813;hb=be762d8d9c71a7aa3121e845c45911c7192b7827;hp=7574802ba17dd3f6c9581b369ab988beea8a60b5;hpb=d1bb7a31fc091606aedbc255a5766ac79e36fa91;p=jalview.git

diff --git a/src/jalview/appletgui/PairwiseAlignPanel.java b/src/jalview/appletgui/PairwiseAlignPanel.java
index 7574802..bc775c6 100644
--- a/src/jalview/appletgui/PairwiseAlignPanel.java
+++ b/src/jalview/appletgui/PairwiseAlignPanel.java
@@ -62,8 +62,8 @@ public class PairwiseAlignPanel extends Panel implements ActionListener
     }
     else
     {
-      seqs = ap.av.getSelectionGroup().getSequencesInOrder(
-              ap.av.getAlignment());
+      seqs = ap.av.getSelectionGroup()
+              .getSequencesInOrder(ap.av.getAlignment());
     }
 
     float scores[][] = new float[seqs.length][seqs.length];
@@ -102,13 +102,13 @@ public class PairwiseAlignPanel extends Panel implements ActionListener
 
     if (count > 2)
     {
-      System.out
-              .println("Pairwise alignment scaled similarity score matrix\n");
+      System.out.println(
+              "Pairwise alignment scaled similarity score matrix\n");
 
       for (int i = 0; i < count; i++)
       {
-        jalview.util.Format.print(System.out, "%s \n", ("" + i) + " "
-                + seqs[i].getName());
+        jalview.util.Format.print(System.out, "%s \n",
+                ("" + i) + " " + seqs[i].getName());
       }
 
       System.out.println("\n");
@@ -117,8 +117,8 @@ public class PairwiseAlignPanel extends Panel implements ActionListener
       {
         for (int j = 0; j < i; j++)
         {
-          jalview.util.Format.print(System.out, "%7.3f", scores[i][j]
-                  / totscore);
+          jalview.util.Format.print(System.out, "%7.3f",
+                  scores[i][j] / totscore);
         }
       }
 
@@ -165,8 +165,8 @@ public class PairwiseAlignPanel extends Panel implements ActionListener
     textarea.setFont(new java.awt.Font("Monospaced", 0, 12));
     textarea.setText("");
     viewInEditorButton.setFont(new java.awt.Font("Verdana", 0, 12));
-    viewInEditorButton.setLabel(MessageManager
-            .getString("label.view_alignment_editor"));
+    viewInEditorButton.setLabel(
+            MessageManager.getString("label.view_alignment_editor"));
     viewInEditorButton.addActionListener(this);
     this.add(scrollPane, BorderLayout.CENTER);
     scrollPane.add(textarea);