X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbin%2FJalview.java;fp=src%2Fjalview%2Fbin%2FJalview.java;h=a05c99562aebe9264a460802bcc5973d8c36e3e2;hb=29bb043dfab1b0bdc1efca22f2e5e3d3e8549368;hp=2c07296dff3db9e74f9048f293b8472fecd1d3c8;hpb=30204a50a9d41ee87f087457cfb5841ccd09b835;p=jalview.git

diff --git a/src/jalview/bin/Jalview.java b/src/jalview/bin/Jalview.java
index 2c07296..a05c995 100755
--- a/src/jalview/bin/Jalview.java
+++ b/src/jalview/bin/Jalview.java
@@ -2061,13 +2061,13 @@ public class Jalview
     {
       String warning = MessageManager
               .getString("warning.using_old_command_line_arguments");
-      String url = "https://www.jalview.org/help/html/features/commandline.html";
+      String url = "<a href=\"https://www.jalview.org/help/html/features/commandline.html\">https://www.jalview.org/help/html/features/commandline.html</a>";
       if (Desktop.instance != null)
       {
         String cont = MessageManager.getString("label.continue");
 
         Desktop.instance.nonBlockingDialog(32, 2, title, warning, url, cont,
-                JvOptionPane.WARNING_MESSAGE, false, false);
+                JvOptionPane.WARNING_MESSAGE, false, true, false);
       }
     }
     if (j.getCommands() != null && j.getCommands().getErrors().size() > 0)
@@ -2087,7 +2087,7 @@ public class Jalview
                 Math.max(message.length(), Math.min(60, shortest)),
                 Math.min(errors.size(), 20), title, message,
                 j.getCommands().errorsToString(), ok,
-                JvOptionPane.WARNING_MESSAGE, true, true);
+                JvOptionPane.WARNING_MESSAGE, true, false, true);
       }
     }
   }