X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbin%2FJalviewJS2.java;fp=src%2Fjalview%2Fbin%2FJalviewJS2.java;h=dd293c9fc617a76be0f9557515d85ce4716cd8ed;hb=d37ae10e4228efe3ccefd8de39a4683acf001c9b;hp=26110f85c6f2d8c41d9dd1dfd1ed0717f7bac318;hpb=a3b8fa7024e7034866f6fe6c18c53177fa31c414;p=jalview.git

diff --git a/src/jalview/bin/JalviewJS2.java b/src/jalview/bin/JalviewJS2.java
index 26110f8..dd293c9 100644
--- a/src/jalview/bin/JalviewJS2.java
+++ b/src/jalview/bin/JalviewJS2.java
@@ -20,16 +20,37 @@ public class JalviewJS2
 
   static {
     /**
-     * @j2sNative
+     * @ could do it this way:
      * 
-     *            J2S.thisApplet.__Info.args =
-     *            ["open","examples/uniref50.fa","features",
-     *            "examples/exampleFeatures.txt"];
+     * j2sNative
+     * 
+     * J2S.thisApplet.__Info.args = [ "open","examples/uniref50.fa",
+     * "features","examples/exampleFeatures.txt", "noannotation" ];
      */
   }
 
   public static void main(String[] args) throws Exception
   {
+    if (args.length == 0)
+    {
+      args = new String[] {
+        //  "headless",
+          "open", "examples/uniref50.fa",
+          "features",
+          "examples/exampleFeatures.txt"
+          // , "noannotation"
+          // not in jalview-develop , "showoverview"
+        //  , "png", "test-bh.png"
+      };
+    }
+
+    // String cmds = "nodisplay -open examples/uniref50.fa -sortbytree -props
+    // test/jalview/io/testProps.jvprops -colour zappo "
+    // + "-jabaws http://www.compbio.dundee.ac.uk/jabaws -nosortbytree "
+    // + "-features examples/testdata/plantfdx.features -annotations
+    // examples/testdata/plantfdx.annotations -tree
+    // examples/testdata/uniref50_test_tree";
+    // args = cmds.split(" ");
     Jalview.main(args);
 	//showFocusTimer();
 }