X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbin%2FJalviewLiteURLRetrieve.java;h=f3a5d7c6dd3ebb23078aec9c9f8d6408c19087ea;hb=c19d2a91ca05e052e3408bf5852d88eb5d0608f1;hp=8ba113d8dde0cf5b62d86982e8250f583bd2e332;hpb=797df64fa2a0a30773d0f48f5494d4155e5a8be3;p=jalview.git diff --git a/src/jalview/bin/JalviewLiteURLRetrieve.java b/src/jalview/bin/JalviewLiteURLRetrieve.java index 8ba113d..f3a5d7c 100644 --- a/src/jalview/bin/JalviewLiteURLRetrieve.java +++ b/src/jalview/bin/JalviewLiteURLRetrieve.java @@ -1,31 +1,31 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7) - * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle + * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2) + * Copyright (C) 2015 The Jalview Authors * * This file is part of Jalview. * * Jalview is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - * + * as published by the Free Software Foundation, either version 3 + * of the License, or (at your option) any later version. + * * Jalview is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty * of MERCHANTABILITY or FITNESS FOR A PARTICULAR * PURPOSE. See the GNU General Public License for more details. * - * You should have received a copy of the GNU General Public License along with Jalview. If not, see . + * You should have received a copy of the GNU General Public License + * along with Jalview. If not, see . + * The Jalview Authors are detailed in the 'AUTHORS' file. */ package jalview.bin; -import jalview.datamodel.Alignment; +import jalview.datamodel.AlignmentI; import jalview.io.AppletFormatAdapter; import jalview.io.FileParse; import java.applet.Applet; -import java.io.BufferedInputStream; -import java.io.BufferedReader; import java.io.InputStream; -import java.io.InputStreamReader; public class JalviewLiteURLRetrieve extends Applet { @@ -120,7 +120,7 @@ public class JalviewLiteURLRetrieve extends Applet { System.out.println("User specified Format is " + format); } - Alignment al = null; + AlignmentI al = null; try { al = new AppletFormatAdapter().readFile(file, protocol, format);