X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbin%2Fargparser%2FArgParser.java;h=155f69e1af586ed3b54991cea80c95fb11a7714d;hb=df111c6157ad56b53c87eb2b20a6856eeea2d0fc;hp=1b8e6ad5629872f21b25cd4588c002253a6814a1;hpb=58735c979dbb573eb12d57e33ef7d6e3f3a82c8e;p=jalview.git diff --git a/src/jalview/bin/argparser/ArgParser.java b/src/jalview/bin/argparser/ArgParser.java index 1b8e6ad..155f69e 100644 --- a/src/jalview/bin/argparser/ArgParser.java +++ b/src/jalview/bin/argparser/ArgParser.java @@ -318,9 +318,13 @@ public class ArgParser } if (bsa != null) + { this.bootstrapArgs = bsa; + } else + { this.bootstrapArgs = BootstrapArgs.getBootstrapArgs(args); + } parse(args, initsubstitutions, allowPrivate); }