X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbin%2Fargparser%2FArgParser.java;h=7581ddeddb151cd86f23f4be6ddafefb3976e5d6;hb=3613fa2821de21019a4b45ea3eec562a5a730c71;hp=b300c67ec52d8a0d9631d5044dd0de532be13a0d;hpb=b8b5965ecce656c11042aabcda9dca342f320e65;p=jalview.git

diff --git a/src/jalview/bin/argparser/ArgParser.java b/src/jalview/bin/argparser/ArgParser.java
index b300c67..7581dde 100644
--- a/src/jalview/bin/argparser/ArgParser.java
+++ b/src/jalview/bin/argparser/ArgParser.java
@@ -250,7 +250,8 @@ public class ArgParser
           mixedExamples[1] = arg;
         }
       }
-      else if (arg.startsWith("-") || arg.equals("open"))
+      else if ((arg.startsWith("-") && !arg.equals(STDOUTFILENAME))
+              || arg.equals("open"))
       {
         d = true;
         if (mixedExamples[0] == null)