X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbinding%2FAlignment.java;fp=src%2Fjalview%2Fbinding%2FAlignment.java;h=0000000000000000000000000000000000000000;hb=4d64932654de3f6ffe07db11d18f2d21f558c6e6;hp=0116b44393eba47157843ede0032ccc5e7b532e8;hpb=382f5ff058a4c2fed1e9874bb712b40f16ec1a4e;p=jalview.git

diff --git a/src/jalview/binding/Alignment.java b/src/jalview/binding/Alignment.java
deleted file mode 100644
index 0116b44..0000000
--- a/src/jalview/binding/Alignment.java
+++ /dev/null
@@ -1,180 +0,0 @@
-/*
- * This class was automatically generated with 
- * <a href="http://www.castor.org">Castor 1.1</a>, using an XML
- * Schema.
- * $Id$
- */
-
-package jalview.binding;
-
-//---------------------------------/
-//- Imported classes and packages -/
-//---------------------------------/
-
-import org.exolab.castor.xml.Marshaller;
-import org.exolab.castor.xml.Unmarshaller;
-
-/**
- * Class Alignment.
- * 
- * @version $Revision$ $Date$
- */
-public class Alignment implements java.io.Serializable
-{
-
-  // --------------------------/
-  // - Class/Member Variables -/
-  // --------------------------/
-
-  /**
-   * Field _annotation.
-   */
-  private jalview.binding.Annotation _annotation;
-
-  /**
-   * Field _sequenceSet.
-   */
-  private jalview.binding.SequenceSet _sequenceSet;
-
-  // ----------------/
-  // - Constructors -/
-  // ----------------/
-
-  public Alignment()
-  {
-    super();
-  }
-
-  // -----------/
-  // - Methods -/
-  // -----------/
-
-  /**
-   * Returns the value of field 'annotation'.
-   * 
-   * @return the value of field 'Annotation'.
-   */
-  public jalview.binding.Annotation getAnnotation()
-  {
-    return this._annotation;
-  }
-
-  /**
-   * Returns the value of field 'sequenceSet'.
-   * 
-   * @return the value of field 'SequenceSet'.
-   */
-  public jalview.binding.SequenceSet getSequenceSet()
-  {
-    return this._sequenceSet;
-  }
-
-  /**
-   * Method isValid.
-   * 
-   * @return true if this object is valid according to the schema
-   */
-  public boolean isValid()
-  {
-    try
-    {
-      validate();
-    } catch (org.exolab.castor.xml.ValidationException vex)
-    {
-      return false;
-    }
-    return true;
-  }
-
-  /**
-   * 
-   * 
-   * @param out
-   * @throws org.exolab.castor.xml.MarshalException
-   *           if object is null or if any SAXException is thrown during
-   *           marshaling
-   * @throws org.exolab.castor.xml.ValidationException
-   *           if this object is an invalid instance according to the schema
-   */
-  public void marshal(final java.io.Writer out)
-          throws org.exolab.castor.xml.MarshalException,
-          org.exolab.castor.xml.ValidationException
-  {
-    Marshaller.marshal(this, out);
-  }
-
-  /**
-   * 
-   * 
-   * @param handler
-   * @throws java.io.IOException
-   *           if an IOException occurs during marshaling
-   * @throws org.exolab.castor.xml.ValidationException
-   *           if this object is an invalid instance according to the schema
-   * @throws org.exolab.castor.xml.MarshalException
-   *           if object is null or if any SAXException is thrown during
-   *           marshaling
-   */
-  public void marshal(final org.xml.sax.ContentHandler handler)
-          throws java.io.IOException,
-          org.exolab.castor.xml.MarshalException,
-          org.exolab.castor.xml.ValidationException
-  {
-    Marshaller.marshal(this, handler);
-  }
-
-  /**
-   * Sets the value of field 'annotation'.
-   * 
-   * @param annotation
-   *          the value of field 'annotation'.
-   */
-  public void setAnnotation(final jalview.binding.Annotation annotation)
-  {
-    this._annotation = annotation;
-  }
-
-  /**
-   * Sets the value of field 'sequenceSet'.
-   * 
-   * @param sequenceSet
-   *          the value of field 'sequenceSet'.
-   */
-  public void setSequenceSet(final jalview.binding.SequenceSet sequenceSet)
-  {
-    this._sequenceSet = sequenceSet;
-  }
-
-  /**
-   * Method unmarshal.
-   * 
-   * @param reader
-   * @throws org.exolab.castor.xml.MarshalException
-   *           if object is null or if any SAXException is thrown during
-   *           marshaling
-   * @throws org.exolab.castor.xml.ValidationException
-   *           if this object is an invalid instance according to the schema
-   * @return the unmarshaled jalview.binding.Alignment
-   */
-  public static jalview.binding.Alignment unmarshal(
-          final java.io.Reader reader)
-          throws org.exolab.castor.xml.MarshalException,
-          org.exolab.castor.xml.ValidationException
-  {
-    return (jalview.binding.Alignment) Unmarshaller
-            .unmarshal(jalview.binding.Alignment.class, reader);
-  }
-
-  /**
-   * 
-   * 
-   * @throws org.exolab.castor.xml.ValidationException
-   *           if this object is an invalid instance according to the schema
-   */
-  public void validate() throws org.exolab.castor.xml.ValidationException
-  {
-    org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
-    validator.validate(this);
-  }
-
-}