X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbinding%2FAnnotationElement.java;fp=src%2Fjalview%2Fbinding%2FAnnotationElement.java;h=0000000000000000000000000000000000000000;hb=4d64932654de3f6ffe07db11d18f2d21f558c6e6;hp=505d91e9e76e3dd85b506463b2fa895176c1628f;hpb=382f5ff058a4c2fed1e9874bb712b40f16ec1a4e;p=jalview.git

diff --git a/src/jalview/binding/AnnotationElement.java b/src/jalview/binding/AnnotationElement.java
deleted file mode 100644
index 505d91e..0000000
--- a/src/jalview/binding/AnnotationElement.java
+++ /dev/null
@@ -1,305 +0,0 @@
-/*
- * This class was automatically generated with 
- * <a href="http://www.castor.org">Castor 1.1</a>, using an XML
- * Schema.
- * $Id$
- */
-
-package jalview.binding;
-
-//---------------------------------/
-//- Imported classes and packages -/
-//---------------------------------/
-
-import org.exolab.castor.xml.Marshaller;
-import org.exolab.castor.xml.Unmarshaller;
-
-/**
- * Class AnnotationElement.
- * 
- * @version $Revision$ $Date$
- */
-public class AnnotationElement implements java.io.Serializable
-{
-
-  // --------------------------/
-  // - Class/Member Variables -/
-  // --------------------------/
-
-  /**
-   * Field _position.
-   */
-  private int _position;
-
-  /**
-   * keeps track of state for field: _position
-   */
-  private boolean _has_position;
-
-  /**
-   * Field _displayCharacter.
-   */
-  private java.lang.String _displayCharacter;
-
-  /**
-   * Field _description.
-   */
-  private java.lang.String _description;
-
-  /**
-   * Field _secondaryStructure.
-   */
-  private java.lang.String _secondaryStructure;
-
-  /**
-   * Field _value.
-   */
-  private float _value;
-
-  /**
-   * keeps track of state for field: _value
-   */
-  private boolean _has_value;
-
-  // ----------------/
-  // - Constructors -/
-  // ----------------/
-
-  public AnnotationElement()
-  {
-    super();
-  }
-
-  // -----------/
-  // - Methods -/
-  // -----------/
-
-  /**
-     */
-  public void deletePosition()
-  {
-    this._has_position = false;
-  }
-
-  /**
-     */
-  public void deleteValue()
-  {
-    this._has_value = false;
-  }
-
-  /**
-   * Returns the value of field 'description'.
-   * 
-   * @return the value of field 'Description'.
-   */
-  public java.lang.String getDescription()
-  {
-    return this._description;
-  }
-
-  /**
-   * Returns the value of field 'displayCharacter'.
-   * 
-   * @return the value of field 'DisplayCharacter'.
-   */
-  public java.lang.String getDisplayCharacter()
-  {
-    return this._displayCharacter;
-  }
-
-  /**
-   * Returns the value of field 'position'.
-   * 
-   * @return the value of field 'Position'.
-   */
-  public int getPosition()
-  {
-    return this._position;
-  }
-
-  /**
-   * Returns the value of field 'secondaryStructure'.
-   * 
-   * @return the value of field 'SecondaryStructure'.
-   */
-  public java.lang.String getSecondaryStructure()
-  {
-    return this._secondaryStructure;
-  }
-
-  /**
-   * Returns the value of field 'value'.
-   * 
-   * @return the value of field 'Value'.
-   */
-  public float getValue()
-  {
-    return this._value;
-  }
-
-  /**
-   * Method hasPosition.
-   * 
-   * @return true if at least one Position has been added
-   */
-  public boolean hasPosition()
-  {
-    return this._has_position;
-  }
-
-  /**
-   * Method hasValue.
-   * 
-   * @return true if at least one Value has been added
-   */
-  public boolean hasValue()
-  {
-    return this._has_value;
-  }
-
-  /**
-   * Method isValid.
-   * 
-   * @return true if this object is valid according to the schema
-   */
-  public boolean isValid()
-  {
-    try
-    {
-      validate();
-    } catch (org.exolab.castor.xml.ValidationException vex)
-    {
-      return false;
-    }
-    return true;
-  }
-
-  /**
-   * 
-   * 
-   * @param out
-   * @throws org.exolab.castor.xml.MarshalException
-   *           if object is null or if any SAXException is thrown during
-   *           marshaling
-   * @throws org.exolab.castor.xml.ValidationException
-   *           if this object is an invalid instance according to the schema
-   */
-  public void marshal(final java.io.Writer out)
-          throws org.exolab.castor.xml.MarshalException,
-          org.exolab.castor.xml.ValidationException
-  {
-    Marshaller.marshal(this, out);
-  }
-
-  /**
-   * 
-   * 
-   * @param handler
-   * @throws java.io.IOException
-   *           if an IOException occurs during marshaling
-   * @throws org.exolab.castor.xml.ValidationException
-   *           if this object is an invalid instance according to the schema
-   * @throws org.exolab.castor.xml.MarshalException
-   *           if object is null or if any SAXException is thrown during
-   *           marshaling
-   */
-  public void marshal(final org.xml.sax.ContentHandler handler)
-          throws java.io.IOException,
-          org.exolab.castor.xml.MarshalException,
-          org.exolab.castor.xml.ValidationException
-  {
-    Marshaller.marshal(this, handler);
-  }
-
-  /**
-   * Sets the value of field 'description'.
-   * 
-   * @param description
-   *          the value of field 'description'.
-   */
-  public void setDescription(final java.lang.String description)
-  {
-    this._description = description;
-  }
-
-  /**
-   * Sets the value of field 'displayCharacter'.
-   * 
-   * @param displayCharacter
-   *          the value of field 'displayCharacter'
-   */
-  public void setDisplayCharacter(final java.lang.String displayCharacter)
-  {
-    this._displayCharacter = displayCharacter;
-  }
-
-  /**
-   * Sets the value of field 'position'.
-   * 
-   * @param position
-   *          the value of field 'position'.
-   */
-  public void setPosition(final int position)
-  {
-    this._position = position;
-    this._has_position = true;
-  }
-
-  /**
-   * Sets the value of field 'secondaryStructure'.
-   * 
-   * @param secondaryStructure
-   *          the value of field 'secondaryStructure'.
-   */
-  public void setSecondaryStructure(
-          final java.lang.String secondaryStructure)
-  {
-    this._secondaryStructure = secondaryStructure;
-  }
-
-  /**
-   * Sets the value of field 'value'.
-   * 
-   * @param value
-   *          the value of field 'value'.
-   */
-  public void setValue(final float value)
-  {
-    this._value = value;
-    this._has_value = true;
-  }
-
-  /**
-   * Method unmarshal.
-   * 
-   * @param reader
-   * @throws org.exolab.castor.xml.MarshalException
-   *           if object is null or if any SAXException is thrown during
-   *           marshaling
-   * @throws org.exolab.castor.xml.ValidationException
-   *           if this object is an invalid instance according to the schema
-   * @return the unmarshaled jalview.binding.AnnotationElement
-   */
-  public static jalview.binding.AnnotationElement unmarshal(
-          final java.io.Reader reader)
-          throws org.exolab.castor.xml.MarshalException,
-          org.exolab.castor.xml.ValidationException
-  {
-    return (jalview.binding.AnnotationElement) Unmarshaller
-            .unmarshal(jalview.binding.AnnotationElement.class, reader);
-  }
-
-  /**
-   * 
-   * 
-   * @throws org.exolab.castor.xml.ValidationException
-   *           if this object is an invalid instance according to the schema
-   */
-  public void validate() throws org.exolab.castor.xml.ValidationException
-  {
-    org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
-    validator.validate(this);
-  }
-
-}