X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fbinding%2FCompoundMatcher.java;fp=src%2Fjalview%2Fbinding%2FCompoundMatcher.java;h=a2d1048102c21c0a3c31725a7aae9ae473b3e1a1;hb=20a4d7ddb86ee996f2b6617a0470922b83354c35;hp=0000000000000000000000000000000000000000;hpb=5610d0f46a76d4269d25148d42f92d867fa1061a;p=jalview.git

diff --git a/src/jalview/binding/CompoundMatcher.java b/src/jalview/binding/CompoundMatcher.java
new file mode 100644
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+++ b/src/jalview/binding/CompoundMatcher.java
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+/*
+ * This class was automatically generated with 
+ * <a href="http://www.castor.org">Castor 1.1</a>, using an XML
+ * Schema.
+ * $Id$
+ */
+
+package jalview.binding;
+
+//---------------------------------/
+//- Imported classes and packages -/
+//---------------------------------/
+
+import org.exolab.castor.xml.Marshaller;
+import org.exolab.castor.xml.Unmarshaller;
+
+/**
+ * Class CompoundMatcher.
+ * 
+ * @version $Revision$ $Date$
+ */
+public class CompoundMatcher implements java.io.Serializable
+{
+
+  // --------------------------/
+  // - Class/Member Variables -/
+  // --------------------------/
+
+  /**
+   * If true, matchers are AND-ed, if false they are OR-ed
+   */
+  private boolean _and;
+
+  /**
+   * keeps track of state for field: _and
+   */
+  private boolean _has_and;
+
+  /**
+   * Field _matcherSetList.
+   */
+  private java.util.Vector _matcherSetList;
+
+  // ----------------/
+  // - Constructors -/
+  // ----------------/
+
+  public CompoundMatcher()
+  {
+    super();
+    this._matcherSetList = new java.util.Vector();
+  }
+
+  // -----------/
+  // - Methods -/
+  // -----------/
+
+  /**
+   * 
+   * 
+   * @param vMatcherSet
+   * @throws java.lang.IndexOutOfBoundsException
+   *           if the index given is outside the bounds of the collection
+   */
+  public void addMatcherSet(final jalview.binding.MatcherSet vMatcherSet)
+          throws java.lang.IndexOutOfBoundsException
+  {
+    // check for the maximum size
+    if (this._matcherSetList.size() >= 2)
+    {
+      throw new IndexOutOfBoundsException(
+              "addMatcherSet has a maximum of 2");
+    }
+
+    this._matcherSetList.addElement(vMatcherSet);
+  }
+
+  /**
+   * 
+   * 
+   * @param index
+   * @param vMatcherSet
+   * @throws java.lang.IndexOutOfBoundsException
+   *           if the index given is outside the bounds of the collection
+   */
+  public void addMatcherSet(final int index,
+          final jalview.binding.MatcherSet vMatcherSet)
+          throws java.lang.IndexOutOfBoundsException
+  {
+    // check for the maximum size
+    if (this._matcherSetList.size() >= 2)
+    {
+      throw new IndexOutOfBoundsException(
+              "addMatcherSet has a maximum of 2");
+    }
+
+    this._matcherSetList.add(index, vMatcherSet);
+  }
+
+  /**
+   */
+  public void deleteAnd()
+  {
+    this._has_and = false;
+  }
+
+  /**
+   * Method enumerateMatcherSet.
+   * 
+   * @return an Enumeration over all jalview.binding.MatcherSet elements
+   */
+  public java.util.Enumeration enumerateMatcherSet()
+  {
+    return this._matcherSetList.elements();
+  }
+
+  /**
+   * Returns the value of field 'and'. The field 'and' has the following
+   * description: If true, matchers are AND-ed, if false they are OR-ed
+   * 
+   * @return the value of field 'And'.
+   */
+  public boolean getAnd()
+  {
+    return this._and;
+  }
+
+  /**
+   * Method getMatcherSet.
+   * 
+   * @param index
+   * @throws java.lang.IndexOutOfBoundsException
+   *           if the index given is outside the bounds of the collection
+   * @return the value of the jalview.binding.MatcherSet at the given index
+   */
+  public jalview.binding.MatcherSet getMatcherSet(final int index)
+          throws java.lang.IndexOutOfBoundsException
+  {
+    // check bounds for index
+    if (index < 0 || index >= this._matcherSetList.size())
+    {
+      throw new IndexOutOfBoundsException(
+              "getMatcherSet: Index value '" + index + "' not in range [0.."
+                      + (this._matcherSetList.size() - 1) + "]");
+    }
+
+    return (jalview.binding.MatcherSet) _matcherSetList.get(index);
+  }
+
+  /**
+   * Method getMatcherSet.Returns the contents of the collection in an Array.
+   * <p>
+   * Note: Just in case the collection contents are changing in another thread,
+   * we pass a 0-length Array of the correct type into the API call. This way we
+   * <i>know</i> that the Array returned is of exactly the correct length.
+   * 
+   * @return this collection as an Array
+   */
+  public jalview.binding.MatcherSet[] getMatcherSet()
+  {
+    jalview.binding.MatcherSet[] array = new jalview.binding.MatcherSet[0];
+    return (jalview.binding.MatcherSet[]) this._matcherSetList
+            .toArray(array);
+  }
+
+  /**
+   * Method getMatcherSetCount.
+   * 
+   * @return the size of this collection
+   */
+  public int getMatcherSetCount()
+  {
+    return this._matcherSetList.size();
+  }
+
+  /**
+   * Method hasAnd.
+   * 
+   * @return true if at least one And has been added
+   */
+  public boolean hasAnd()
+  {
+    return this._has_and;
+  }
+
+  /**
+   * Returns the value of field 'and'. The field 'and' has the following
+   * description: If true, matchers are AND-ed, if false they are OR-ed
+   * 
+   * @return the value of field 'And'.
+   */
+  public boolean isAnd()
+  {
+    return this._and;
+  }
+
+  /**
+   * Method isValid.
+   * 
+   * @return true if this object is valid according to the schema
+   */
+  public boolean isValid()
+  {
+    try
+    {
+      validate();
+    } catch (org.exolab.castor.xml.ValidationException vex)
+    {
+      return false;
+    }
+    return true;
+  }
+
+  /**
+   * 
+   * 
+   * @param out
+   * @throws org.exolab.castor.xml.MarshalException
+   *           if object is null or if any SAXException is thrown during
+   *           marshaling
+   * @throws org.exolab.castor.xml.ValidationException
+   *           if this object is an invalid instance according to the schema
+   */
+  public void marshal(final java.io.Writer out)
+          throws org.exolab.castor.xml.MarshalException,
+          org.exolab.castor.xml.ValidationException
+  {
+    Marshaller.marshal(this, out);
+  }
+
+  /**
+   * 
+   * 
+   * @param handler
+   * @throws java.io.IOException
+   *           if an IOException occurs during marshaling
+   * @throws org.exolab.castor.xml.ValidationException
+   *           if this object is an invalid instance according to the schema
+   * @throws org.exolab.castor.xml.MarshalException
+   *           if object is null or if any SAXException is thrown during
+   *           marshaling
+   */
+  public void marshal(final org.xml.sax.ContentHandler handler)
+          throws java.io.IOException,
+          org.exolab.castor.xml.MarshalException,
+          org.exolab.castor.xml.ValidationException
+  {
+    Marshaller.marshal(this, handler);
+  }
+
+  /**
+   */
+  public void removeAllMatcherSet()
+  {
+    this._matcherSetList.clear();
+  }
+
+  /**
+   * Method removeMatcherSet.
+   * 
+   * @param vMatcherSet
+   * @return true if the object was removed from the collection.
+   */
+  public boolean removeMatcherSet(
+          final jalview.binding.MatcherSet vMatcherSet)
+  {
+    boolean removed = _matcherSetList.remove(vMatcherSet);
+    return removed;
+  }
+
+  /**
+   * Method removeMatcherSetAt.
+   * 
+   * @param index
+   * @return the element removed from the collection
+   */
+  public jalview.binding.MatcherSet removeMatcherSetAt(final int index)
+  {
+    java.lang.Object obj = this._matcherSetList.remove(index);
+    return (jalview.binding.MatcherSet) obj;
+  }
+
+  /**
+   * Sets the value of field 'and'. The field 'and' has the following
+   * description: If true, matchers are AND-ed, if false they are OR-ed
+   * 
+   * @param and
+   *          the value of field 'and'.
+   */
+  public void setAnd(final boolean and)
+  {
+    this._and = and;
+    this._has_and = true;
+  }
+
+  /**
+   * 
+   * 
+   * @param index
+   * @param vMatcherSet
+   * @throws java.lang.IndexOutOfBoundsException
+   *           if the index given is outside the bounds of the collection
+   */
+  public void setMatcherSet(final int index,
+          final jalview.binding.MatcherSet vMatcherSet)
+          throws java.lang.IndexOutOfBoundsException
+  {
+    // check bounds for index
+    if (index < 0 || index >= this._matcherSetList.size())
+    {
+      throw new IndexOutOfBoundsException(
+              "setMatcherSet: Index value '" + index + "' not in range [0.."
+                      + (this._matcherSetList.size() - 1) + "]");
+    }
+
+    this._matcherSetList.set(index, vMatcherSet);
+  }
+
+  /**
+   * 
+   * 
+   * @param vMatcherSetArray
+   */
+  public void setMatcherSet(
+          final jalview.binding.MatcherSet[] vMatcherSetArray)
+  {
+    // -- copy array
+    _matcherSetList.clear();
+
+    for (int i = 0; i < vMatcherSetArray.length; i++)
+    {
+      this._matcherSetList.add(vMatcherSetArray[i]);
+    }
+  }
+
+  /**
+   * Method unmarshal.
+   * 
+   * @param reader
+   * @throws org.exolab.castor.xml.MarshalException
+   *           if object is null or if any SAXException is thrown during
+   *           marshaling
+   * @throws org.exolab.castor.xml.ValidationException
+   *           if this object is an invalid instance according to the schema
+   * @return the unmarshaled jalview.binding.CompoundMatcher
+   */
+  public static jalview.binding.CompoundMatcher unmarshal(
+          final java.io.Reader reader)
+          throws org.exolab.castor.xml.MarshalException,
+          org.exolab.castor.xml.ValidationException
+  {
+    return (jalview.binding.CompoundMatcher) Unmarshaller
+            .unmarshal(jalview.binding.CompoundMatcher.class, reader);
+  }
+
+  /**
+   * 
+   * 
+   * @throws org.exolab.castor.xml.ValidationException
+   *           if this object is an invalid instance according to the schema
+   */
+  public void validate() throws org.exolab.castor.xml.ValidationException
+  {
+    org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
+    validator.validate(this);
+  }
+
+}