X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FAlignedCodonFrame.java;fp=src%2Fjalview%2Fdatamodel%2FAlignedCodonFrame.java;h=627f0a6a6ba112e3178ed909e80432ca8a551b10;hb=4d7f98a6dd54d9863ba449ec79dcd95d25ed863d;hp=eb977bc4ab95a0c8830dc86b26f09e61e4eb8d38;hpb=619cc880371f3228e6a1fb33c6bfb6e7a7e2622c;p=jalview.git

diff --git a/src/jalview/datamodel/AlignedCodonFrame.java b/src/jalview/datamodel/AlignedCodonFrame.java
index eb977bc..627f0a6 100644
--- a/src/jalview/datamodel/AlignedCodonFrame.java
+++ b/src/jalview/datamodel/AlignedCodonFrame.java
@@ -20,12 +20,12 @@
  */
 package jalview.datamodel;
 
-import java.util.ArrayList;
-import java.util.List;
-
 import jalview.util.MapList;
 import jalview.util.MappingUtils;
 
+import java.util.ArrayList;
+import java.util.List;
+
 /**
  * Stores mapping between the columns of a protein alignment and a DNA alignment
  * and a list of individual codon to amino acid mappings between sequences.
@@ -373,7 +373,8 @@ public class AlignedCodonFrame
       if (dnaSeqs[mi] == targetDs && dnaToProt[mi].to == sourceDs)
       {
         int[] codon = dnaToProt[mi].map.locateInFrom(pos, pos);
-        if (codon != null) {
+        if (codon != null)
+        {
           return codon;
         }
       }
@@ -422,8 +423,7 @@ public class AlignedCodonFrame
      * Read off the mapped nucleotides (converting to position base 0)
      */
     codonPos = MappingUtils.flattenRanges(codonPos);
-    return new char[]
-    { dnaSeq[codonPos[0] - 1], dnaSeq[codonPos[1] - 1],
+    return new char[] { dnaSeq[codonPos[0] - 1], dnaSeq[codonPos[1] - 1],
         dnaSeq[codonPos[2] - 1] };
   }
 
@@ -444,7 +444,7 @@ public class AlignedCodonFrame
     List<SequenceI> related = new ArrayList<SequenceI>();
     SequenceI seqDs = seq.getDatasetSequence();
     seqDs = seqDs != null ? seqDs : seq;
-  
+
     for (int ds = 0; ds < dnaSeqs.length; ds++)
     {
       final Mapping mapping = dnaToProt[ds];