X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FAlignedCodonFrame.java;fp=src%2Fjalview%2Fdatamodel%2FAlignedCodonFrame.java;h=fbc8a61a6b5a413293f2f6a4cccf4d404448b504;hb=da3b58afa56be8d7177ff824a3490509dbcf984d;hp=9fa11ccd98c9cd4212a04970920ac23a574347a5;hpb=c9296c060f69f3eeab1f6da2a07dbdb87c946e52;p=jalview.git

diff --git a/src/jalview/datamodel/AlignedCodonFrame.java b/src/jalview/datamodel/AlignedCodonFrame.java
index 9fa11cc..fbc8a61 100644
--- a/src/jalview/datamodel/AlignedCodonFrame.java
+++ b/src/jalview/datamodel/AlignedCodonFrame.java
@@ -464,8 +464,7 @@ public class AlignedCodonFrame
       {
         for (SequenceI sourceAligned : al.getSequences())
         {
-          if (ssm.mapping.to == sourceAligned.getDatasetSequence()
-                  || ssm.mapping.to == sourceAligned)
+          if (ssm.covers(sourceAligned,true))
           {
             return sourceAligned;
           }
@@ -483,7 +482,7 @@ public class AlignedCodonFrame
       {
         for (SequenceI sourceAligned : al.getSequences())
         {
-          if (ssm.fromSeq == sourceAligned.getDatasetSequence())
+          if (ssm.covers(sourceAligned,true))
           {
             return sourceAligned;
           }