X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FAlignmentAnnotation.java;h=9354d55fa447e8dc43a1b6acdd08ae1fa5cb9329;hb=ed581b841fe9361bfe80bb006df190a29df264fb;hp=6ac5da8b1d3ebc62786694083ade1ed03fbe974f;hpb=940b13e266be76ac186330c615c39989cce654c7;p=jalview.git

diff --git a/src/jalview/datamodel/AlignmentAnnotation.java b/src/jalview/datamodel/AlignmentAnnotation.java
index 6ac5da8..9354d55 100755
--- a/src/jalview/datamodel/AlignmentAnnotation.java
+++ b/src/jalview/datamodel/AlignmentAnnotation.java
@@ -94,6 +94,10 @@ public class AlignmentAnnotation
    */
   private long invalidrnastruc = -2;
 
+  private double bitScore;
+
+  private double eValue;
+
   /**
    * Updates the _rnasecstr field Determines the positions that base pair and
    * the positions of helices based on secondary structure from a Stockholm file
@@ -1714,4 +1718,24 @@ public class AlignmentAnnotation
     return aa;
   }
 
+  public double getBitScore()
+  {
+    return bitScore;
+  }
+
+  public void setBitScore(double bitScore)
+  {
+    this.bitScore = bitScore;
+  }
+
+  public double getEValue()
+  {
+    return eValue;
+  }
+
+  public void setEValue(double eValue)
+  {
+    this.eValue = eValue;
+  }
+
 }