X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FAlignmentAnnotation.java;h=9c3af271926de7b81ec0ebdfee51d7ca3084bc81;hb=bc85369667c2665d81631e96f0701038f04f9bb3;hp=bb45b67f1a358531a67a6abb2683747dc58a117c;hpb=384e43c561fbc2446923dd2ed227e2931a8ac406;p=jalview.git

diff --git a/src/jalview/datamodel/AlignmentAnnotation.java b/src/jalview/datamodel/AlignmentAnnotation.java
index bb45b67..9c3af27 100755
--- a/src/jalview/datamodel/AlignmentAnnotation.java
+++ b/src/jalview/datamodel/AlignmentAnnotation.java
@@ -959,12 +959,8 @@ public class AlignmentAnnotation
 
   public void adjustForAlignment()
   {
-    if (sequenceRef == null)
-    {
-      return;
-    }
-
-    if (annotations == null)
+    if (sequenceRef == null || sequenceMapping == null
+            || annotations == null)
     {
       return;
     }