X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FAlignmentView.java;fp=src%2Fjalview%2Fdatamodel%2FAlignmentView.java;h=6d6d4c3e7697568115263a70fd002a63ab1b5804;hb=5c1262f120d4fca072bc8fd9800a1a856cc46843;hp=e6604d1ef940cb2301e8678356d71d1b1c3f3fb2;hpb=2e85bf4a497748e05031bf27bad3e700ef5d6577;p=jalview.git

diff --git a/src/jalview/datamodel/AlignmentView.java b/src/jalview/datamodel/AlignmentView.java
index e6604d1..6d6d4c3 100644
--- a/src/jalview/datamodel/AlignmentView.java
+++ b/src/jalview/datamodel/AlignmentView.java
@@ -51,6 +51,37 @@ public class AlignmentView
   private boolean isNa = false;
 
   /**
+   * reference to the complementary CDS/Protein alignment for this alignment, if available
+   */
+  private AlignmentView complementView=null;
+  
+  /**
+   * setter for 
+   * @param complementView
+   */
+  public void setComplement(AlignmentView complementView)
+  {
+    this.complementView = complementView;
+    
+  }
+  /**
+   * 
+   * @return true if a complement is available
+   */
+  public boolean hasComplementView()
+  {
+    return complementView!=null;
+  }
+  /**
+   * 
+   * @return the complement view or null
+   */
+  public AlignmentView getComplementView()
+  {
+    return complementView;
+  }
+  
+  /**
    * false if the view concerns peptides
    * 
    * @return