X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FAlignmentView.java;h=325fc459e4caf2d20e38183ff2d1a6aa72af25a0;hb=a7a95ccfd3f0b5cd94e477ba37b9011d7ce84aee;hp=0b4e23677df8f5f5a195c6785109e2d4598568a6;hpb=1f9508680a03c7c73f612c0161d85724dfa9433d;p=jalview.git

diff --git a/src/jalview/datamodel/AlignmentView.java b/src/jalview/datamodel/AlignmentView.java
index 0b4e236..325fc45 100644
--- a/src/jalview/datamodel/AlignmentView.java
+++ b/src/jalview/datamodel/AlignmentView.java
@@ -115,7 +115,13 @@ public class AlignmentView
     }
 
     // get the alignment's group list and make a copy
-    Vector grps = new Vector(alignment.getGroups());
+    Vector grps = new Vector();
+    Vector gg = alignment.getGroups();
+    Enumeration gge = gg.elements();
+    while (gge.hasMoreElements())
+    {
+      grps.addElement(gge.nextElement());
+    }
     ScGroup[] sgrps = null;
     boolean addedgps[] = null;
     if (grps != null)
@@ -177,7 +183,7 @@ public class AlignmentView
         {
           for (int sg = 0; sg < sgrps.length; sg++)
           {
-            if (((Vector) grps.get(sg)).contains(selseqs[i]))
+            if (((Vector) grps.elementAt(sg)).contains(selseqs[i]))
             {
               sequences[csi].setGroupMembership(sgrps[sg]);
               sgrps[sg].sg.deleteSequence(selseqs[i], false);