X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FBinarySequence.java;fp=src%2Fjalview%2Fdatamodel%2FBinarySequence.java;h=62ee97443a37ab68b37bb10665d2058781934b84;hb=d5bcc3830eab04e6db816e1c2ad8fce1dc189612;hp=ed57dce238e1b650cc883daf8ff073cda3b744ab;hpb=3ebdd4e28382e38a181aae1eed71549f603f9025;p=jalview.git

diff --git a/src/jalview/datamodel/BinarySequence.java b/src/jalview/datamodel/BinarySequence.java
index ed57dce..62ee974 100755
--- a/src/jalview/datamodel/BinarySequence.java
+++ b/src/jalview/datamodel/BinarySequence.java
@@ -69,13 +69,9 @@ public class BinarySequence extends Sequence
   {
     int nores = (isNa) ? ResidueProperties.maxNucleotideIndex
             : ResidueProperties.maxProteinIndex;
-    // Set all matrix to 0
+
     dbinary = new double[getSequence().length * nores];
 
-    for (int i = 0; i < dbinary.length; i++)
-    {
-      dbinary[i] = 0.0;
-    }
     return nores;
   }
 
@@ -134,14 +130,8 @@ public class BinarySequence extends Sequence
 
   private void matrixEncode(final int[] aaIndex, final int[][] matrix)
   {
-    // Set all matrix to 0
-    // dbinary = new double[getSequence().length * 21];
-
     int nores = initMatrixGetNoRes();
 
-    // for (int i = 0; i < dbinary.length; i++) {
-    // dbinary[i] = 0.0;
-    // }
     for (int i = 0, iSize = getSequence().length; i < iSize; i++)
     {
       int aanum = nores - 1;