X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FCigarArray.java;h=f6e586227c3c76ef20328b9cdc5a962340620e6b;hb=4d7f98a6dd54d9863ba449ec79dcd95d25ed863d;hp=ebc7cd108949e510e1904ea002b5ba92370a3e77;hpb=619cc880371f3228e6a1fb33c6bfb6e7a7e2622c;p=jalview.git diff --git a/src/jalview/datamodel/CigarArray.java b/src/jalview/datamodel/CigarArray.java index ebc7cd1..f6e5862 100644 --- a/src/jalview/datamodel/CigarArray.java +++ b/src/jalview/datamodel/CigarArray.java @@ -97,8 +97,7 @@ public class CigarArray extends CigarBase private static int[] _calcStartEndBounds(AlignmentI alignment, SequenceGroup selectionGroup) { - int[] startend = new int[] - { 0, 0, 0 }; + int[] startend = new int[] { 0, 0, 0 }; if (selectionGroup != null) { startend[0] = selectionGroup.getSize(); @@ -343,8 +342,11 @@ public class CigarArray extends CigarBase delpos = new java.util.Vector(); } int delstart = cursor, delend = cursor + range[i] - 1; // inclusive - delpos.addElement(new int[] - { vcursor + offset, range[i] }); // index of right hand column after + delpos.addElement(new int[] { vcursor + offset, range[i] }); // index of + // right + // hand + // column + // after // hidden region boundary offset += range[i] - 1; // shift in visible column coordinates System.arraycopy(operation, i + 1, operation, i, length - i);