X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FContactListProviderI.java;fp=src%2Fjalview%2Fdatamodel%2FContactListProviderI.java;h=75de1a46aaeb0ea3a8b5a6bff0675da8182fabba;hb=108f2d4b40f172ad6a34647133dbb18dfab150f7;hp=a4e0b79ae62a274d45366443c107d863faf1f1d6;hpb=4d5f77436c8d77a776ca7c042611f36238c97057;p=jalview.git

diff --git a/src/jalview/datamodel/ContactListProviderI.java b/src/jalview/datamodel/ContactListProviderI.java
index a4e0b79..75de1a4 100644
--- a/src/jalview/datamodel/ContactListProviderI.java
+++ b/src/jalview/datamodel/ContactListProviderI.java
@@ -30,7 +30,7 @@ public interface ContactListProviderI
 
 
   /**
-   * Return positions in local reference corresponding to cStart and cEnd in matrix data
+   * Return positions in local reference corresponding to cStart and cEnd in matrix data. Positions are base 1 column indices for sequence associated matrices.
    * @param cStart
    * @param cEnd
    * @return int[] { start, end (inclusive) for each contiguous segment}