X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FMappedFeatures.java;fp=src%2Fjalview%2Fdatamodel%2FMappedFeatures.java;h=46379749e114fc6c1ef1c6a85633552567276b20;hb=9c98d4bd666346f6ad3892c5394b7da3be82d93e;hp=ca6db1bc3df439decc0d591fd0e86006c738dcbc;hpb=c7b2143c9cf7c5e05ad63251f7d3910751b16d20;p=jalview.git

diff --git a/src/jalview/datamodel/MappedFeatures.java b/src/jalview/datamodel/MappedFeatures.java
index ca6db1b..4637974 100644
--- a/src/jalview/datamodel/MappedFeatures.java
+++ b/src/jalview/datamodel/MappedFeatures.java
@@ -112,7 +112,8 @@ public class MappedFeatures
      * determine codon positions and canonical codon
      * for a peptide-to-CDS mapping
      */
-    int[] codonIntervals = mapping.getMap().locateInFrom(toPosition, toPosition);
+    int[] codonIntervals = mapping.getMap().locateInFrom(toPosition,
+            toPosition);
     int[] codonPositions = codonIntervals == null ? null
             : MappingUtils.flattenRanges(codonIntervals);
     if (codonPositions != null && codonPositions.length == 3)
@@ -120,12 +121,12 @@ public class MappedFeatures
       codonPos = codonPositions;
       baseCodon = new char[3];
       int cdsStart = featureSequence.getStart();
-      baseCodon[0] = Character
-              .toUpperCase(featureSequence.getCharAt(codonPos[0] - cdsStart));
-      baseCodon[1] = Character
-              .toUpperCase(featureSequence.getCharAt(codonPos[1] - cdsStart));
-      baseCodon[2] = Character
-              .toUpperCase(featureSequence.getCharAt(codonPos[2] - cdsStart));
+      baseCodon[0] = Character.toUpperCase(
+              featureSequence.getCharAt(codonPos[0] - cdsStart));
+      baseCodon[1] = Character.toUpperCase(
+              featureSequence.getCharAt(codonPos[1] - cdsStart));
+      baseCodon[2] = Character.toUpperCase(
+              featureSequence.getCharAt(codonPos[2] - cdsStart));
     }
     else
     {
@@ -238,8 +239,7 @@ public class MappedFeatures
          */
         var.append("c.").append(String.valueOf(cdsPos))
                 .append(String.valueOf(baseCodon[i])).append(">")
-                .append(String.valueOf(variantCodon[i]))
-                .append("(p.=)");
+                .append(String.valueOf(variantCodon[i])).append("(p.=)");
       }
       else
       {