X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FSearchResults.java;fp=src%2Fjalview%2Fdatamodel%2FSearchResults.java;h=0074d2a260adb990aeaeeee40ff992845775c4a7;hb=8a43b8353b89a47002ef17c959ed61281fc4d826;hp=31736e506ac3e715f1f42105b357b0227b1ca599;hpb=55bfdb07355198ae1a1a8b5e14933b4669113ca6;p=jalview.git

diff --git a/src/jalview/datamodel/SearchResults.java b/src/jalview/datamodel/SearchResults.java
index 31736e5..0074d2a 100755
--- a/src/jalview/datamodel/SearchResults.java
+++ b/src/jalview/datamodel/SearchResults.java
@@ -175,11 +175,15 @@ public class SearchResults implements SearchResultsI
   @Override
   public boolean involvesSequence(SequenceI sequence)
   {
+    final int start = sequence.getStart();
+    final int end = sequence.getEnd();
+
     SequenceI ds = sequence.getDatasetSequence();
-    for (SearchResultMatchI _m : matches)
+    for (SearchResultMatchI m : matches)
     {
-      SequenceI matched = _m.getSequence();
-      if (matched != null && (matched == sequence || matched == ds))
+      SequenceI matched = m.getSequence();
+      if (matched != null && (matched == sequence || matched == ds)
+              && (m.getEnd() >= start) && (m.getStart() <= end))
       {
         return true;
       }