X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FSequence.java;fp=src%2Fjalview%2Fdatamodel%2FSequence.java;h=c7581d82b81b755852cafb8c6265e91bace4a332;hb=4d7f98a6dd54d9863ba449ec79dcd95d25ed863d;hp=19ad30f4cf50772aed734c3a9206ac5e6bfbec2f;hpb=619cc880371f3228e6a1fb33c6bfb6e7a7e2622c;p=jalview.git diff --git a/src/jalview/datamodel/Sequence.java b/src/jalview/datamodel/Sequence.java index 19ad30f..c7581d8 100755 --- a/src/jalview/datamodel/Sequence.java +++ b/src/jalview/datamodel/Sequence.java @@ -59,7 +59,6 @@ public class Sequence extends ASequence implements SequenceI RNA rna; - /** * This annotation is displayed below the alignment but the positions are tied * to the residues of this sequence @@ -748,8 +747,7 @@ public class Sequence extends ASequence implements SequenceI { if (lastj != -1) { - map.add(new int[] - { lastj, j - 1 }); + map.add(new int[] { lastj, j - 1 }); lastj = -1; } } @@ -757,8 +755,7 @@ public class Sequence extends ASequence implements SequenceI } if (lastj != -1) { - map.add(new int[] - { lastj, j - 1 }); + map.add(new int[] { lastj, j - 1 }); lastj = -1; } return map; @@ -956,7 +953,6 @@ public class Sequence extends ASequence implements SequenceI .toArray(new AlignmentAnnotation[annotation.size()]); } - @Override public boolean hasAnnotation(AlignmentAnnotation ann) { @@ -1208,8 +1204,7 @@ public class Sequence extends ASequence implements SequenceI for (int si = 0; si < sfs.length; si++) { SequenceFeature sf[] = (mp != null) ? mp.locateFeature(sfs[si]) - : new SequenceFeature[] - { new SequenceFeature(sfs[si]) }; + : new SequenceFeature[] { new SequenceFeature(sfs[si]) }; if (sf != null && sf.length > 0) { for (int sfi = 0; sfi < sf.length; sfi++)