X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fdatamodel%2FSequenceGroup.java;h=d253560625d8d94a70575d10d6cf3c426efbeef7;hb=9ff5fcbe6681e37c441656e2f704f8d9bab9179c;hp=7bb967023e03505f5c3ae89eff6e1bfdeb4e2885;hpb=13ae48dd55af238e2c25e957c5feb5a858d7e90e;p=jalview.git

diff --git a/src/jalview/datamodel/SequenceGroup.java b/src/jalview/datamodel/SequenceGroup.java
index 7bb9670..d253560 100755
--- a/src/jalview/datamodel/SequenceGroup.java
+++ b/src/jalview/datamodel/SequenceGroup.java
@@ -998,6 +998,18 @@ public class SequenceGroup
   private boolean showConsensusHistogram;
 
   /**
+   * set this alignmentAnnotation object as the one used to render consensus annotation
+   * @param aan
+   */
+  public void setConsensus(AlignmentAnnotation aan)
+  {
+    if (consensus==null)
+    {
+      consensus=aan;
+    }
+  }
+  
+  /**
    * 
    * @return automatically calculated consensus row
    */
@@ -1026,6 +1038,17 @@ public class SequenceGroup
   }
 
   /**
+   * set this alignmentAnnotation object as the one used to render consensus annotation
+   * @param aan
+   */
+  public void setConservationRow(AlignmentAnnotation aan)
+  {
+    if (conservation==null)
+    {
+      conservation=aan;
+    }
+  }
+  /**
    * get the conservation annotation row for this group
    * 
    * @return autoCalculated annotation row